Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Analysis of the impact of solvent on contacts prediction in proteins.

(2009) BMC Struct Biol 9

PubMed: 19368710 | PubMedCentral: PMC2676287 | DOI: 10.1186/1472-6807-9-22

PFAM ID PDB ID a R (Å) N b % id c L d Ran acc e Acc f R g Opt α h X d dry i Opt Xd α j X d wet | opt α k PF00014 6PTI 1.70 151 33 52 0.096 0.346 3.61 1 9.37 1 11.16 PF0... 705 1AF7 2.00 85 20 57 0.081 0.241 2.65 0.5, 4, 10 6.14 2 7.63 PF00062 5LYZ 2.00 22 46 127 0.043 0.078 1.91 0, 0.5 2.68 0 2.68 PF00018 1BU1 2.60 61 28 56 0.088 0.357 4.06 0.5 12.99 0 12.99 PF03900 1PDA 1.76 21 25 74 0.062 0.237 3.82 2 9.18 0.2 9.99 PF00034 1CTJ 1.10 35 17 89 0.061 0.250 4.10 1 9.13 0.1 10.34 PF01568 1DMR 1.82 88 18 113 0.044 0.050 1.14 0.2, 0.5 10.62 2 12.53 PF00127 8PAZ 1.60 31 29 89 0.055 0.102 1.85 2 0.50 1 4.82 PF01814 2MHR 1.30 295 12 49 0.098 0.400 4.08 0.5, 2 8.39 2 13.14 PF00017 1BMB 1.80 59 28 93 0.058 0.212 3.66 0 – 0.5 5.98 1 8.37 PF01320 1AYI 2.00 45 47 86 0.056 0.233 4.15 0.2 16.04 0 16.04 PF08666 1AME 1.65 171 14 66 0.074 0.273 3.69 0 10.25 0 10.25 PF01337 1A19 2.76 30 25 89 0.065 0.178 2.87 0, 0.1 4.55 0.1 4.72 PF00595 2HB2 2.30 56 19 85 0.062 0.233 3.75 0.5 – 2 10.16 1 11.67 PF00531 1WMG 2.10 92 14 82 0.066 0.250 3.79 0 – 0.5 7.67 0.2 7.95 PF00397 1EG3 2.00 73 32 30 0.143 0.467 3.26 2 – 20 6.59 2 8.81 PF01335 2F1S 1.40 40 21 76 0.072 0.237 3.88 0.1, 0.2 5.66 0.2 5.96 PF00619 1CY5 1.30 61 16 85 0.066 0.209 3.43 0.2 – 2 5.09 2 9.42 PF02213 1SYX 2.35 112 28 58 0.083 0.241 2.91 0.5 – 2 7.37 0.5 7.77 PF05743 1UZX 1.85 28 27 118 0.035 0.068 1.98 0.1 7.22 0 7.22 PF00536 1B4F 1.95 69 28 74 0.076 0.395 5.19 0.2 – 2 15.53 2 16.36 PF03114 1ZWW 2.30 29 19 195 0.021 0.074 3.53 0.2 2.41 20 3.99 PF00169 1NTY 1.70 139 10 112 0.050 0.071 1.43 0, 0.2, 0.5 5.46 2 7.53 PF08416 1WVH 1.50 49 28 132 0.040 0.106 2.65 2, 4 0.53 0.1 1.24 PF01981 1WN2 1.20 69 43 116 0.049 0.172 3.52 0.1 – 0.5 7.63 20 12.38 PF03992 1XBW 1.90 116 15 65 0.068 0.125 1.84 0.5 3.34 0 3.34 PF00907 1H6F 1.70 23 49 183 0.032 0.033 1.03 0 – 20 3.30 2 6.03 PF02237 1WPY 1.60 47 21 48 0.094 0.167 1.77 0.5 – 2 -2.83 0.5 0.22 PF08031 2AXR 1.98 64 34 34 0.135 0.235 1.74 0.1, 0.2 -0.05 2 3.37 PF02861 1K6K 1.80 165 21 51 0.098 0.440 4.49 1, 4, 10, 20 9.55 20 13.21 PF02834 1VGJ 1.94 106 14 85 0.048 0.119 2.48 4 – 20 -0.51 4, 10 3.21 PF01423 1KQ1 1.55 128 23 60 0.079 0.167 2.11 0.2, 0.5 5.78 0.1, 0.2 7.14 PF01472 1AS0 1.80 106 24 78 0.058 0.128 2.21 1 – 20 3.57 2, 4 11.45 PF01909 1NO5 1.80 119 14 91 0.059 0.133 2.26 0.1 – 1 4.97 0.2 6.01 PF09261 1R34 1.95 79 31 78 0.069 0.205 2.97 0.1, 0.2 4.87 0.1 6.64 PF01315 1VLB 1.28 28 19 117 0.041 0.207 5.05 1, 2 7.70 2 10.28 PF04545 1KU3 1.80 128 31 54 0.096 0.370 3.86 0, 0.1, 1, 10, 20 12.37 10, 20 12.76 PF00984 1MV8 1.55 24 17 98 0.048 0.184 3.83 0.5 – 20 8.27 0.2 9.78 PF01658 1U1I 1.90 20 31 105 0.049 0.096 1.96 0.1 – 20 1.93 0.5 6.28 PF00745 1GPJ 1.95 34 23 99 0.048 0.100 2.08 0.1 – 0.5 3.17 0.1 4.17 PF03099 1WNL 1.60 65 14 117 0.043 0.121 2.81 0 13.7 0.2 14.20 PF01985 1JO0 1.37 50 23 84 0.064 0.167 2.60 0 – 0.2 6.96 0 6.96 PF08436 1Q0Q 1.90 77 57 94 0.049 0.213 4.34 0 – 0.1 6.91 10 10.15 PF02881 1JPN 1.90 52 19 85 0.063 0.119 1.89 0 – 20 3.94 2 5.78 PF01966 1YNB 1.76 158 12 91 0.057 0.333 5.85 0 – 0.2 -0.79 2 2.20 PF00191 1YII 1.42 178 28 66 0.076 0.273 3.59 0 – 0.2 -0.35 10 1.05 PF00317 1XJE 1.90 79 23 90 0.056 0.178 3.17 0.5 – 2 10.01 0.5 13.16 PF00046 1PUF 1.90 184 37 60 0.082 0.333 4.07 1, 2 6.07 2 8.60 PF00077 5FIV 1.90 48 27 108 0.049 0.093 1.89 2 -1.37 1 3.63 PF00042 1ECN 1.40 73 18 101 0.046 0.163 3.56 1, 2 6.89 2 7.19 a PDB ID; b Number of sequences; c Average sequences pairwise similarity (%); d Reference sequence length; e Random accuracy; f Accuracy for optimal α ; g Improvement ratio over random prediction for optimal α ; h Values for α = 0; i α corresponding to the highest accuracy; j α corresponding to the highest X d ; k X d highest value.

Publication Year: 2009


An effective evolutionary algorithm for protein folding on 3D FCC HP model by lattice rotation and generalized move sets.

(2013) Proteome Sci 11

PubMed: 24565217 | PubMedCentral: PMC3908773 | DOI: 10.1186/1477-5956-11-S1-S19

We further submit 5 sequences in data set IV, which are selected from PDB with the ID: 4BP2, 2AAS, 5LYZ, 9WGA, and 1RBP , and used in [ 45 ] to study the effect of disulfide bonds in protein structure... prediction.

Publication Year: 2013