Citations in PubMed

Primary Citation PubMed: 10766443 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information.

(2010) BMC Bioinformatics 11

PubMed: 20667087 | PubMedCentral: PMC2921408 | DOI: 10.1186/1471-2105-11-402

Figure 3 Comparison between the three profiles on the complex of Bacillus pasteurii urease with acetohydroxamate anion(PDB id: 4UBP , chain A) .

Figure 4 Performance improvement by the classifier ensemble on the complex of Bacillus pasteurii urease with acetohydroxamate anion(PDB id: 4UBP , chain A) .

Publication Year: 2010

Efficient sampling in fragment-based protein structure prediction using an estimation of distribution algorithm.

(2013) PLoS One 8

PubMed: 23935913 | PubMedCentral: PMC3723781 | DOI: 10.1371/journal.pone.0068954

1‰ C α RMSD (Å) 1% C α RMSD (Å) Best model (Å) Target EdaFold AA EdaFold CG EdaFold AA EdaFold CG EdaFold AA EdaFold CG 1di2 0.70 0.75 0.86 0.99 0.51 0.... 4 1scj 3.26 3.14 4.08 3.44 2.35 2.41 1tig 3.28 3.33 3.74 3.74 1.75 2.17 4ubp 4.13 4.27 4.90 5.16 3.03 3.04 1acf 3.20 3.67 3.94 4.32 2.20 2.44 1‰ C α RMSD is the average over the 1‰ lowest C α RMSD to native models.

Publication Year: 2013

PubMed ID is not available.

Published in 2010

PubMedCentral: PMC3823284

The 3D crystallographic structures of three bacterial ureases were successfully resolved: Klebsiella aerogenes (1FWJ), B. pasteurii (4UBP) and H. pylori (1E9Z).

Publication Year: 2010

Design of new and potent diethyl thiobarbiturates as urease inhibitors: a computational approach.

(2014) Bioinformation 10

PubMed: 24966538 | PubMedCentral: PMC4070040 | DOI: 10.6026/97320630010299

Results & Discussion In the present study, calculations on the interactions at the binding pocket of Bacillus pasteurii urease (PDB entry Code 4UBP) were carried out for nine arylidene barbitu... ates.

Methodology Receptor 3D structure preparation : The three dimensional (3D) X-ray structure of BP urease with the resolution 1.55 Å was retrieved from the protein data bank (; code 4UBP) [ 18 ].

Publication Year: 2014