Primary Citation PubMed: 10766443
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Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information.
(2010) BMC Bioinformatics 11
PubMed: 20667087 | PubMedCentral: PMC2921408 | DOI: 10.1186/1471-2105-11-402
Figure 3 Comparison between the three profiles on the complex of Bacillus pasteurii urease with acetohydroxamate anion(PDB id: 4UBP , chain A) .
Figure 4 Performance improvement by the classifier ensemble on the complex of Bacillus pasteurii urease with acetohydroxamate anion(PDB id: 4UBP , chain A) .
Publication Year: 2010
Efficient sampling in fragment-based protein structure prediction using an estimation of distribution algorithm.
(2013) PLoS One 8
PubMed: 23935913 | PubMedCentral: PMC3723781 | DOI: 10.1371/journal.pone.0068954
1‰ C α RMSD (Å) 1% C α RMSD (Å) Best model (Å) Target EdaFold AA EdaFold CG EdaFold AA EdaFold CG EdaFold AA EdaFold CG 1di2 0.70 0.75 0.86 0.99 0.51 0.... 4 1scj 3.26 3.14 4.08 3.44 2.35 2.41 1tig 3.28 3.33 3.74 3.74 1.75 2.17 4ubp 4.13 4.27 4.90 5.16 3.03 3.04 1acf 3.20 3.67 3.94 4.32 2.20 2.44 1‰ C α RMSD is the average over the 1‰ lowest C α RMSD to native models.
Publication Year: 2013
PubMed ID is not available.
Published in 2010
The 3D crystallographic structures of three bacterial ureases were successfully resolved: Klebsiella aerogenes (1FWJ), B. pasteurii (4UBP) and H. pylori (1E9Z).
Design of new and potent diethyl thiobarbiturates as urease inhibitors: a computational approach.
(2014) Bioinformation 10
PubMed: 24966538 | PubMedCentral: PMC4070040 | DOI: 10.6026/97320630010299
Results & Discussion In the present study, calculations on the interactions at the binding pocket of Bacillus pasteurii urease (PDB entry Code 4UBP) were carried out for nine arylidene barbitu... ates.
Methodology Receptor 3D structure preparation : The three dimensional (3D) X-ray structure of BP urease with the resolution 1.55 Å was retrieved from the protein data bank ( http://www.rscb.org./pdb; code 4UBP) [ 18 ].
Publication Year: 2014
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