Primary Citation PubMed: 3442675
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Training a scoring function for the alignment of small molecules.
(2010) J Chem Inf Model 50
PubMed: 20831240 | PubMedCentral: PMC2946173 | DOI: 10.1021/ci100227h
Table 4 Success Rates of the 28 Rigid-Body Cross-Alignments of 8 Thermolysin Ligands Using Various Methods a SURFCOMP,( 24 ) electrostatic potential 75% SURFCOMP,( 24 ) lipophilic potential 71% Cosgro... e et al.( 25 ) 50% Shapelets( 6 ) 71% current work 93% a The eight thermolysin ligands have PDB ID’s 1THL , 1TLP , 1TMN , 3TMN , 4TMN , 5TLN , 5TMN , and 6TMN .
Publication Year: 2010
Protonate3D: assignment of ionization states and hydrogen coordinates to macromolecular structures.
(2009) Proteins 75
PubMed: 18814299 | PubMedCentral: PMC3056144 | DOI: 10.1002/prot.22234
Many of the interactions involved in the catalysis are exhibited by a bound carbobenzoxy-Phe(P)-Leu-Ala ligand, ZF(P)LA: PDB:4TMN is a 1.7 Å resolution X-ray crystal structure of thermolysin c... mplexed with ZF(P)LA, which affords an opportunity to examine Protonate3D's protonation assignment of Glu143.
Publication Year: 2009
istar: a web platform for large-scale protein-ligand docking.
(2014) PLoS One 9
PubMed: 24475049 | PubMedCentral: PMC3901662 | DOI: 10.1371/journal.pone.0085678
Figure S6 Redocking result of PDB ID 4TMN.
Publication Year: 2014
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