Citations in PubMed

Primary Citation PubMed: 3442675 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Training a scoring function for the alignment of small molecules.

(2010) J Chem Inf Model 50

PubMed: 20831240 | PubMedCentral: PMC2946173 | DOI: 10.1021/ci100227h

Table 4 Success Rates of the 28 Rigid-Body Cross-Alignments of 8 Thermolysin Ligands Using Various Methods a SURFCOMP,( 24 ) electrostatic potential 75% SURFCOMP,( 24 ) lipophilic potential 71% Cosgro... e et al.( 25 ) 50% Shapelets( 6 ) 71% current work 93% a The eight thermolysin ligands have PDB ID’s 1THL , 1TLP , 1TMN , 3TMN , 4TMN , 5TLN , 5TMN , and 6TMN .

Publication Year: 2010


Protonate3D: assignment of ionization states and hydrogen coordinates to macromolecular structures.

(2009) Proteins 75

PubMed: 18814299 | PubMedCentral: PMC3056144 | DOI: 10.1002/prot.22234

Many of the interactions involved in the catalysis are exhibited by a bound carbobenzoxy-Phe(P)-Leu-Ala ligand, ZF(P)LA: PDB:4TMN is a 1.7 Å resolution X-ray crystal structure of thermolysin c... mplexed with ZF(P)LA, which affords an opportunity to examine Protonate3D's protonation assignment of Glu143.

Publication Year: 2009


istar: a web platform for large-scale protein-ligand docking.

(2014) PLoS One 9

PubMed: 24475049 | PubMedCentral: PMC3901662 | DOI: 10.1371/journal.pone.0085678

Figure S6 Redocking result of PDB ID 4TMN.

Publication Year: 2014