Primary Citation PubMed: 2856083
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Genome-wide diversity and selective pressure in the human rhinovirus.
(2007) Virol J 4
PubMed: 17477878 | PubMedCentral: PMC1892812 | DOI: 10.1186/1743-422X-4-40
Mapping dN/dS values onto 3-dimensional crystal structures Viral pentamer structures were generated from the NCBI Protein Database (pdb) files of HRV2 (pdb id 1FPN), HRV14 (pdb id 4RHV), and HRV16 (pd... id 1AYM) using the Oligomer Generator utility from the VIPERdb website [ 94 ].
Publication Year: 2007
Distinguishing molecular features and clinical characteristics of a putative new rhinovirus species, human rhinovirus C (HRV C).
(2008) PLoS One 3
PubMed: 18382652 | PubMedCentral: PMC2268738 | DOI: 10.1371/journal.pone.0001847
Other picornavirus reference PDB files used in this study: HRV-2 (1FBN), HRV-3 (1RHI), HRV-14 (4RHV), CV-A21 (1Z7S), E-11 (1H8T), PV-1 (1HXS) and CV-B3 (1COV).
Publication Year: 2008
Representation of viruses in the remediated PDB archive.
(2008) Acta Crystallogr D Biol Crystallogr D64
PubMed: 18645236 | PubMedCentral: PMC2677383 | DOI: 10.1107/S0907444908017393
( b ) 4rhv , rhinovirus with icosahedral symmetry (Arnold & Rossmann, 1988 ▶ ).
Equine rhinitis A virus and its low pH empty particle: clues towards an aphthovirus entry mechanism?
(2009) PLoS Pathog 5
PubMed: 19816570 | PubMedCentral: PMC2752993 | DOI: 10.1371/journal.ppat.1000620
(A) A phylogenetic tree  based on a structural alignment of complete protomers (VP1,2,3 & 4) for picornaviruses (RCSB protein data bank code (Berman et al. 2000)): Theiler'... virus (1TME), Mengo virus 1 (1MEC), Mengo virus 2 (2MEV) FMDV A10 (1QBE), FMDV O (1BBT), FMDV reduced (1FOD), HRV 14 (4RHV), HRV 16 (1ND2), HRV 1A (1R1A), Swine vesicular disease virus (1OOP), Coxsackie virus 9 (1D4M), Echovirus 1 (1EV1), PV 2 (1EAH).
Publication Year: 2009
A series of PDB related databases for everyday needs.
(2011) Nucleic Acids Res 39
PubMed: 21071423 | PubMedCentral: PMC3013697 | DOI: 10.1093/nar/gkq1105
A PDB_REDO entry cannot be made for X-ray structures in which not all atoms are explicitly listed, but need to be created through matrix operations, which is common practice with viral capsids [e.g. P... B entry 4rhv; ( 55 )].
Publication Year: 2011
Evaluation and use of in-silico structure-based epitope prediction with foot-and-mouth disease virus.
(2013) PLoS One 8
PubMed: 23667434 | PubMedCentral: PMC3646828 | DOI: 10.1371/journal.pone.0061122
Structure Selection Two Picornavirus structures were selected for program optimisation; Poliovirus P1 Mahoney strain (PDB code 1HXS-  ) and Rhinovirus 14 (4RHV-  ).
Publication Year: 2013
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