Primary Citation PubMed: 10339548
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Identification of PPARgamma partial agonists of natural origin (I): development of a virtual screening procedure and in vitro validation.
(2012) PLoS One 7
PubMed: 23226391 | PubMedCentral: PMC3511273 | DOI: 10.1371/journal.pone.0050816
Full agonists Partial agonists cluster 1 cluster 2 cluster 3 cluster 4 cluster 5 1FM9 1I7I 1FM6 2GTK 2G0G 4PRG 2Q6R 2FVJ 2Q6S 1RDT 1KNU 1ZGY 3B3K 2G0H 2Q61 2WM0 1K74 2F4B 2PRG 2ATH 2Q5S 3BC5 2HWQ 2FVJ... 1NYX 2Q5P 2Q8S 2HWR 1ZEO 2HFP 2P4Y Generation of Structure-Based Pharmacophores LigandScout v2.03 (Inte:ligand, Vienna, Austria, http://www.inteligand.com/ligandscout/ )  ,  was used for the analysis of the 31 PPARγ structures from Table 5 and the analysis of the possible interactions between the crystallized ligands and the ligand-binding pocket of PPARγ.
The poses that passed the pharmacophore and docking screenings were submitted to an electrostatic/shape similarity analysis, using the experimental poses of the PPARγ partial agonists crystallized at the structures 2G0H, 4PRG, 2Q5S, 2FVJ and 2Q6S as queries.
Publication Year: 2012
Identification of PPARgamma partial agonists of natural origin (II): in silico prediction in natural extracts with known antidiabetic activity.
(2013) PLoS One 8
PubMed: 23405231 | PubMedCentral: PMC3566095 | DOI: 10.1371/journal.pone.0055889
The aligned poses that passed the pharmacophore and docking screenings were submitted to an electrostatic/shape similarity analysis, using the PPARγ partial agonists crystallized in the struct... res 2G0H, 4PRG, 2Q5S, 2FVJ and 2Q6S as a queries.
Publication Year: 2013
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