Primary Citation PubMed: 23884902
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Published in 2014
Swiss PDB Viewer ( www.spdbv.vital-it.ch ) was used to align four 3WJ building blocks (PDB ID: 4KZ2) 23 in a planar configuration utilizing the internal ∼60° angle, created by helix on... (H1) and helix two (H2), at each corner of the square ( Figure 1 A).
Publication Year: 2014
Enhancing immunomodulation on innate immunity by shape transition among RNA triangle, square and pentagon nanovehicles.
(2014) Nucleic Acids Res 42
PubMed: 25092921 | PubMedCentral: PMC4150753 | DOI: 10.1093/nar/gku516
MATERIALS AND METHODS RNA nanoparticles design, synthesis and self-assembly The 3WJ crystal structure of the pRNA molecule (PDB ID: 4KZ2) was primarily used for designing polygon models using Swiss PD... viewer, as previously described ( 18 ).
This study, based on the previously reported versatile pRNA 3WJ 3D motifs (PDB accession ID: 4KZ2) ( 10 , 51 ), shows that the 3WJ structure can be folded into desired conformations based on the dynamics of the 60°∠AOB, demonstrating the ability to tune the physical and structural properties of RNA polygons for a variety of technological, biological and medicinal needs.
ACCESSION NUMBER PDB ID: 4KZ2.
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