Primary Citation PubMed: 23827680
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Published in 2014
Table 1 Crystallographic Structures of Pol β Catalytic Intermediates intermediate (conformation) a ligand PDB entry refs I (O) none 1BPD, 3UXN ( 18 ), ( 78 ) II (O) DNA 1BPX, 3ISB ( 30 ), ( 66... ) III (O) DNA, dNTP 4F5N, 4F5O, 4F5P b ( 34 ) IV (C) DNA, dNTP 2BPF, 1BPY, 2FMS, 1HUO, 4KLD, 4KLE, 4KLF, 3C2L, b 3C2M, b 4KLP, 4KLQ, b 4KLS b ( 30 ), ( 36 ), ( 37 ), ( 39 ), ( 46 ), ( 65 ) V (C) DNA +1 , PP i 1HUZ, 4KLG, 4KLH, 4KLI, 4KLJ, 4KLL, 4KLM, 4KLO, 4KLT b ( 39 ), ( 46 ) VI (O) DNA +1 , PP i – – VII (O) DNA +1 1BPZ, 1TV9, b 1TVA, b 4KLU b ( 30 ), ( 39 ), ( 79 ) a The global conformation is specified as open (O) or closed (C).
Publication Year: 2014
Published in 2015
The crystal structure of Pol β in a closed ternary complex with gapped primer-template and incoming dNTP (e.g. PDB ID: 4KLF) reveals close packing of the second and third inter-nucleotide phos... hates at the N p N p NpN OH primer terminus against the polymerase, with hydrogen bonds to these phosphates from the Gly105, Gly107, Ser109 and Ala110 main-chain amides ( 22 ).
Publication Year: 2015
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