Primary Citation PubMed: 24116139
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A remote palm domain residue of RB69 DNA polymerase is critical for enzyme activity and influences the conformation of the active site.
(2013) PLoS One 8
PubMed: 24116139 | PubMedCentral: PMC3792054 | DOI: 10.1371/journal.pone.0076700
( E ) Overlay of ternary complex II (PDB ID code: 4KHN) and the wild type (PDB ID code: 3NCI) polymerase active sites, highlighting the large differences in the conformation of the β- and ... 3b3;-phosphates of the incoming nucleotide.
atoms Total 7,642 15,972 15,657 Protein 7,384 14,183 13,928 DNA – 1,256 1,256 Ligands/Ions 38 128 169 Water 220 406 304 B -factors Protein 62.8 36.5 65.3 DNA – 52.3 72.6 Ligands/Ions 82.7 50.8 86.0 Water 58.7 32.9 50.0 RMS deviations Bond lengths (Å) 0.008 0.014 0.011 Bond angles (°) Ramachandran 1.016 1.035 1.192 Favored (%) 95.34 96.3 96.3 Outliers (%) 0.33 0.40 0.30 PDB ID 4I9L 4I9Q 4KHN 10.1371/journal.pone.0076700.
Coordinates for the apoenzyme and both ternary complex structures were deposited in the Protein Data Bank with accession codes 4I9L, 4I9Q, and 4KHN, respectively.
Publication Year: 2013
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