Primary Citation PubMed: 23523372
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Structure and function of pre-mRNA 5'-end capping quality control and 3'-end processing.
(2014) Biochemistry 53
PubMed: 24617759 | PubMedCentral: PMC3977584 | DOI: 10.1021/bi401715v
Table 1 Recently Published Structures of Protein Factors Involved in Pre-mRNA 3′-End Processing or 5′-End Capping Quality Surveillance protein factor subdomains Protein Data Bank entri... s refs CPSF archaeal CPSF-73 metallo-β-lactamase, β-CASP 2YCB, 2XR1 ( 21 ), ( 22 ) archaeal CPSF-73–RNA complex metallo-β-lactamase, β-CASP 3AF6 ( 20 ) CPSF-30–NS1A complex CPSF-30: zinc fingers 2 and 3; NS1A: effector 2RHK ( 29 ) CstF Rna14–Rna15 complex Rna14: full length; Rna15: hinge 4EBA, 4E85, 4E6H ( 37 ) Rna14–Rna15 complex Rna14: monkeytail; Rna15: hinge 2L9B ( 40 ) CstF-50 homodimerization 2XZ2 ( 39 ) Rna15 RRM 2X1B ( 44 ) Rna15–RNA complex RRM 2X1A, 2X1F ( 44 ) Rna15–Hrp1–RNA complex Rna15: RRM; Hrp1: RRM 2KM8 ( 43 ) CF I m CF I m 25 full length 3BAP, 2CL3, 3BHO, 2J8Q ( 50 ), ( 51 ) CF I m 25–RNA complex full length 3MDG, 3MDI ( 52 ) CF I m 25–CF I m 68 complex CF I m 25: full length; CF I m 68: RRM 3Q2S ( 53 ) CF I m 25–CF I m 68–RNA complex CF I m 25: full length; CF I m 68: RRM 3Q2T ( 53 ) CF I m 25–CF I m 59 complex CF I m 25: full length; CF I m 59: RRM 3N9U unpublished (2010) PAP PAPγ core 4LT6 ( 74 ) PAP–Fip1 complex PAP: full length; Fip1: NTD fragment 3C66 ( 23 ) PAPD1 3PQ1 ( 77 ) cytoplasmic polyadenylation CPE-binding protein (CPEB) ZZ domain 2M13 ( 86 ) symplekin-Ssu72 symplekin NTD 3ODR, 3ODS, 3GS3, 3O2T ( 88 ), ( 146 ) Ssu72 full length 3OMW, 3OMX, 3FDF ( 147 ) Ssu72–Pol II CTD pSer5 complex full length 3P9Y ( 98 ) symplekin–Ssu72 complex Symplekin: NTD; Ssu72: full length 3O2S ( 88 ) symplekin–Ssu72–Pol II CTD pSer5 complexes Symplekin: NTD; Ssu72: full length 3O2Q, 4IMJ, 4IMI ( 88 ), ( 97 ) symplekin–Ssu72–Pol II CTD pSer7 complexes Symplekin: NTD; Ssu72: full length 4H3H, 4H3K ( 99 ) histone mRNA 3′-end processing SLBP–RNA complex RBD fragment 2KJM ( 148 ) SLBP–3′hExo–RNA complex SLBP: RBD; 3′hExo: full length 4L8R ( 112 ) SLBP–SLIP1 complex SLBP: fragment; SLIP1: full length 4JHK ( 106 ) mRNA 5′-end capping quality surveillance DXO–RNA complexes full length 4J7L, 4J7M ( 143 ) DXO–m 7 GpppG complex full length 4J7N ( 143 ) Dxo1 full length 4GPU, 4GPS ( 142 ) Dom3Z (DXO) full length 3FQI ( 140 ) Dom3Z–GDP complex full length 3FQJ ( 140 ) Rai1 full length 3FQG ( 140 ) Rat1–Rai1 complex 3FQD ( 140 ) Canonical Pre-mRNA 3′-End Processing Key sequence elements in the 3′-untranslated regions (UTRs) of pre-mRNAs are recognized for 3′-end processing.
(B) Structure of mouse DXO in complex with the m 7 GpppG cap analogue (gray sticks) (PDB entry 4J7N).
Publication Year: 2014
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