Primary Citation PubMed: 23517011
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Optimization of 3,5-dimethylisoxazole derivatives as potent bromodomain ligands.
(2013) J Med Chem 56
PubMed: 23517011 | PubMedCentral: PMC3640414 | DOI: 10.1021/jm301588r
(C) Overlaying the X-ray crystal structures of ( R )- 8 (PDB code 4J0R, carbon = orange) and ( S )- 8 (PDB code 4J0S, carbon = yellow) demonstrates that the hydroxyl group attached to the stereogenic ... enter is solvent exposed.
(D) The phenol hydroxyl group of 8 (PDB code 4J0S, carbon = yellow) forms a hydrogen bond with one of the conserved ZA channel water molecules.
(E) Docking studies indicate that a feasible binding mode for 9 (docked, carbon = orange) is in a similar orientation as ( S )- 8 (PDB code 4J0S, carbon = yellow), with the 3,5-dimethylisoxazole occupying the KAc-binding pocket and the phenyl ring residing on the WPF shelf.
document-id-old-9 jm301588r document-id-new-14 jm-2012-01588r ccc-price Accession Codes Atomic coordinates and structure factors for the reported crystal structures have been deposited with the Protein Data Bank under accession codes 4J0R [( R )- 8 ] and 4J0S [( S )- 8 ].
Figure 4 (A) X-ray crystal structures of compound 3 (PDB code 3SVG, carbon = orange) and ( S )- 8 (PDB code 4J0S, carbon = yellow) both bound to human BRD4(1).
(B) Overlaying the X-ray crystal structure of ( S )- 8 (PDB code 4J0S, carbon = yellow) and 1 (PDB code 3MXF, carbon = orange) demonstrates that the phenyl group of ( S )- 8 binds to the WPF shelf in a similar position as the chlorophenyl group of 1 .
Publication Year: 2013
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.