Primary Citation PubMed: 24116139
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A remote palm domain residue of RB69 DNA polymerase is critical for enzyme activity and influences the conformation of the active site.
(2013) PLoS One 8
PubMed: 24116139 | PubMedCentral: PMC3792054 | DOI: 10.1371/journal.pone.0076700
( B ) Overlay of ternary complex I (PDB ID code: 4I9Q) and the wild type (PDB ID code: 3NCI) polymerase active sites in their respective ternary complexes highlighting the different conformation of th... phosphates of the incoming nucleotide, the metal ions and the flip of the 411 side chain.
atoms Total 7,642 15,972 15,657 Protein 7,384 14,183 13,928 DNA – 1,256 1,256 Ligands/Ions 38 128 169 Water 220 406 304 B -factors Protein 62.8 36.5 65.3 DNA – 52.3 72.6 Ligands/Ions 82.7 50.8 86.0 Water 58.7 32.9 50.0 RMS deviations Bond lengths (Å) 0.008 0.014 0.011 Bond angles (°) Ramachandran 1.016 1.035 1.192 Favored (%) 95.34 96.3 96.3 Outliers (%) 0.33 0.40 0.30 PDB ID 4I9L 4I9Q 4KHN 10.1371/journal.pone.0076700.
Coordinates for the apoenzyme and both ternary complex structures were deposited in the Protein Data Bank with accession codes 4I9L, 4I9Q, and 4KHN, respectively.
Publication Year: 2013
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