Primary Citation PubMed: 24116139
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A remote palm domain residue of RB69 DNA polymerase is critical for enzyme activity and influences the conformation of the active site.
(2013) PLoS One 8
PubMed: 24116139 | PubMedCentral: PMC3792054 | DOI: 10.1371/journal.pone.0076700
Crystal structure of the Pol D714A apoenzyme To gain insight into the origin of the unexpected decrease in polymerization rate of the D714A mutant we decided to solve the crystal structure of the exon... clease deficient Pol D714A apoenzyme (PDB ID code: 4I9L, Table 3 ).
atoms Total 7,642 15,972 15,657 Protein 7,384 14,183 13,928 DNA – 1,256 1,256 Ligands/Ions 38 128 169 Water 220 406 304 B -factors Protein 62.8 36.5 65.3 DNA – 52.3 72.6 Ligands/Ions 82.7 50.8 86.0 Water 58.7 32.9 50.0 RMS deviations Bond lengths (Å) 0.008 0.014 0.011 Bond angles (°) Ramachandran 1.016 1.035 1.192 Favored (%) 95.34 96.3 96.3 Outliers (%) 0.33 0.40 0.30 PDB ID 4I9L 4I9Q 4KHN 10.1371/journal.pone.0076700.
Coordinates for the apoenzyme and both ternary complex structures were deposited in the Protein Data Bank with accession codes 4I9L, 4I9Q, and 4KHN, respectively.
( A ) Overlay of the wild type (PDB ID code 1IH7; navy blue) and Pol D714A apoenzyme structures (PDB ID code: 4I9L; yellow), showing the overall fold of the mutant enzyme.
Publication Year: 2013
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