Citations in PubMed

Primary Citation PubMed: 23625962 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera.

(2013) Nucleic Acids Res 41

PubMed: 23625962 | PubMedCentral: PMC3695512 | DOI: 10.1093/nar/gkt323

Mapping ( A ) the effect of mutations on RNA affinity or ( B ) the CSP of individual amide protons on RNA binding on the RBD structure (Hera_RBD_K444/449A, PDB-ID 4I68) reveals two clusters, one invol... ing α-helix α1 and β-strand β2 and a second involving the C-terminal tail.

ACCESSION NUMBERS PDB-IDs 4I69, 4I68 and 4I67.

Data collection and refinement statistics Data set R463A, 4I69 R444/449A, 4I68 RNA-complex, 4I67 Construct 425-510 421-510 424-499 Data collection 78.8–1.8 46.3–1.63 44.2–2.3 Resolution range (Å) a (1.9–1.8) (1.72–1.63) (2.4–2.3) Space group P3 1 P2 1 2 1 2 1 P6 1 Cell dimensions (Å) a = 49.2, c = 78.8 a = 25.2, b = 46.0, c = 59.6 a = 88.4, c = 28.9 Unique reflections 19 275 (2381) 9118 (1292) 5963 (714) Multiplicity 3.3 (1.7) 6.4 (4.0) 9.7 (9.9) Completeness (%) 95.6 (78.5) 99.4 (97.5) 99.9 (99.4) R sym (%) b , c 9.2 (58.7) 15.3 (63.5) 5.2 (86.8) Average <I/σ(I)> b 8.9 (1.1) 8.5 (1.4) 19.1 (1.2) Refinement 42.7–1.8 36.4–1.63 44.2–2.3 Resolution range (Å) (1.9–1.8) (1.87–1.63) (2.9–2.3) R cryst (%) c 20.4 (32.1) 18.2 (22.5) 18.0 (27.6) R free (%) c 24.5 (32.5) 23.1 (26.1) 23.4 (36.0) Number of residues/H 2 O/nucleotides 252/65/– 90/111/– 76/11/4 Rmsd bonds/angles (Å/°) 0.010/1.3 0.006/1.2 0.007/1.1 Ramachandran plot (%) d 97.6/2.4 98.7/1.3 94.6/5.4 a Values in parentheses correspond to the highest resolution shell.

Publication Year: 2013