Citations in PubMed

Primary Citation PubMed: 23424282 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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HAMP domain conformers that propagate opposite signals in bacterial chemoreceptors.

(2013) PLoS Biol 11

PubMed: 23424282 | PubMedCentral: PMC3570549 | DOI: 10.1371/journal.pbio.1001479

Accession Numbers The atomic coordinates and structure factors of the L44H and V33G crystal structures have been deposited in the Protein Data Bank ( http://www.rcsb.org/pdb/home/home.do ) under acces... ion codes 4I3M and 4I44.

Publication Year: 2013


Investigating the allosteric regulation of YfiN from Pseudomonas aeruginosa: clues from the structure of the catalytic domain.

(2013) PLoS One 8

PubMed: 24278422 | PubMedCentral: PMC3838380 | DOI: 10.1371/journal.pone.0081324

To model the later domain (residues 182-246) we used as structural template the HAMP domain of the aerotaxis transducer AER2 (PDB Code: 4I3M [ 39 ]), while transmembrane helices and neighboring positi... ely charged loop regions (residues 11-34; 162-184) were modeled based on Sensor protein QSEC (PDB Code: 2KSE [ 41 ]), for all alignments see Figure S3 .

A three-dimensional model of YfiN (residues 11-253) was constructed using the MODELLER-8 package [ 57 ], using as structural templates the following crystal structures: the N-terminal domain of the HAMP/GGDEF/EAL protein LapD from P. fluorescens (residues 35-161; PDB Code: 3pjv [ 24 ]); the HAMP domain of Aerotaxis transducer AER2 (residues 182-246; PDB Code: 4i3m [ 39 ]); Sensor protein QSEC (residues 11-34; 162-184; PDB Code: 2kse [ 41 ]); diguanylate cyclase response regulator WspR (residues 247-253; PDB Code: 3i5c [ 29 ]).

Publication Year: 2013


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4447245

I-TASSER ( 30 , 31 ) was used to model the PhoQ HAMP domain (residues 217 to 266) using Af1503 ( 2L7H ), Af1503 A291F ( 2L7I ), Aer2 HAMP1 ( 3LNR ), and Aer2 HAMP1 L44H ( 4I3M ) as templates.

I-TASSER ( 30 , 31 ) was used to construct models using as templates the structures of Af1503 ( 2L7H and 2L7I ) and Aer2 HAMP1 ( 3LNR and 4I3M ) in two different conformations.

Publication Year: 2015