Primary Citation PubMed: 23424282
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HAMP domain conformers that propagate opposite signals in bacterial chemoreceptors.
(2013) PLoS Biol 11
PubMed: 23424282 | PubMedCentral: PMC3570549 | DOI: 10.1371/journal.pbio.1001479
Accession Numbers The atomic coordinates and structure factors of the L44H and V33G crystal structures have been deposited in the Protein Data Bank ( http://www.rcsb.org/pdb/home/home.do ) under acces... ion codes 4I3M and 4I44.
Publication Year: 2013
Investigating the allosteric regulation of YfiN from Pseudomonas aeruginosa: clues from the structure of the catalytic domain.
(2013) PLoS One 8
PubMed: 24278422 | PubMedCentral: PMC3838380 | DOI: 10.1371/journal.pone.0081324
To model the later domain (residues 182-246) we used as structural template the HAMP domain of the aerotaxis transducer AER2 (PDB Code: 4I3M [ 39 ]), while transmembrane helices and neighboring positi... ely charged loop regions (residues 11-34; 162-184) were modeled based on Sensor protein QSEC (PDB Code: 2KSE [ 41 ]), for all alignments see Figure S3 .
A three-dimensional model of YfiN (residues 11-253) was constructed using the MODELLER-8 package [ 57 ], using as structural templates the following crystal structures: the N-terminal domain of the HAMP/GGDEF/EAL protein LapD from P. fluorescens (residues 35-161; PDB Code: 3pjv [ 24 ]); the HAMP domain of Aerotaxis transducer AER2 (residues 182-246; PDB Code: 4i3m [ 39 ]); Sensor protein QSEC (residues 11-34; 162-184; PDB Code: 2kse [ 41 ]); diguanylate cyclase response regulator WspR (residues 247-253; PDB Code: 3i5c [ 29 ]).
PubMed ID is not available.
Published in 2015
I-TASSER ( 30 , 31 ) was used to model the PhoQ HAMP domain (residues 217 to 266) using Af1503 ( 2L7H ), Af1503 A291F ( 2L7I ), Aer2 HAMP1 ( 3LNR ), and Aer2 HAMP1 L44H ( 4I3M ) as templates.
I-TASSER ( 30 , 31 ) was used to construct models using as templates the structures of Af1503 ( 2L7H and 2L7I ) and Aer2 HAMP1 ( 3LNR and 4I3M ) in two different conformations.
Publication Year: 2015
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