Primary Citation PubMed: 23519422
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Crystallization and preliminary X-ray characterization of the tetrapyrrole-biosynthetic enzyme porphobilinogen deaminase from Bacillus megaterium.
(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69
PubMed: 23908040 | PubMedCentral: PMC3729171 | DOI: 10.1107/S1744309113018526
The X-ray structure of the Arabidopsis thaliana enzyme has recently been solved (PDB entry 4htg ; Roberts et al. , 2013 ▶ ); prior to this, structures were available for Escherichia coli PBGD ... PDB entries 1pda (Louie et al. , 1992 ▶ , 1996 ▶ ), 1gtk (Helliwell et al. , 2003 ▶ ), 1ah5 (Hädener et al. , 1999 ▶ ), 1ypn (Helliwell et al. , 1998 ▶ ) and 2ypn (Nieh et al. , 1999 ▶ )] and the human enzyme (PDB entries 3eq1 and 3ecr ; Gill et al. , 2009 ▶ ; Song et al. , 2009 ▶ ).
Publication Year: 2013
Structural insights into E. coli porphobilinogen deaminase during synthesis and exit of 1-hydroxymethylbilane.
(2014) PLoS Comput Biol 10
PubMed: 24603363 | PubMedCentral: PMC3945110 | DOI: 10.1371/journal.pcbi.1003484
Five crystal structures of E. coli PBGD ( EcPBGD): 1GTK  , 1YPN  , 2YPN  , 1AH5  , 1PDA  ; two of hPBGD: 3ECR  , 3EQ1  ; and most recently, one of Arabidopsis thaliana PBGD (A... PBGD): 4HTG  are available in the protein data bank (PDB)  .
Validation of loop conformation For validation the 2YPN active site loop modeled by Modeller9v8, AtPBGD structure (4HTG)  was used to model this loop.
Publication Year: 2014
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