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Primary Citation PubMed: 23382856 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Combining functional and structural genomics to sample the essential Burkholderia structome.

(2013) PLoS One 8

PubMed: 23382856 | PubMedCentral: PMC3561365 | DOI: 10.1371/journal.pone.0053851

Protein with structure(s) solved Protein name PDB ID(s) Burkholderia species Putative essential gene Human homolog * % seq ID, coverage * Deep pocket BURPS1710b_0395 S-adenosylmethionine synthetase 3I... L B. pseudomallei BTH_I0174 Q00266 58.7, 94.7 Yes BTH_I0211 Ferredoxin-NADP reductase 4F7D, 4FK8 B. thailandensis BTH_I0211 – – Yes BTH_I0291 Dihydroneopterin aldolase 3V9O B. thailandensis BTH_I0291 – – Yes BTH_I0294 Uncharacterized ACR 4F3N, 4G67 B. thailandensis BTH_I0294 Q7L592 26.6, 92.9 Yes BURPS1710b_0748 Phosphopantetheine adenylyltransferase 3K9W, 3PXU B. pseudomallei BTH_I0469 – – Yes BTH_I0472 Peptidyl-tRNA hydrolase (PTH) 3V2I B. thailandensis BTH_I0472 Q86Y79 36.4, 86.6 Yes BURPS1710b_0753 Ribose-phosphate pyrophosphokinase (prsA) 3DAH B. pseudomallei BTH_I0474 P11908 47.5, 98.1 Yes BTH_I0484 PTS IIA-like nitrogen-regulatory protein PtsN 3URR B. thailandensis BTH_I0484 – – Yes BTH_I0732 Ornithine carbamoyltransferase 4F2G B. thailandensis BTH_I0732 P00480 39.8, 96.1 Yes BURPS1710b_1080 Adenylate kinase (adk) 3GMT B. pseudomallei BTH_I0739 P54819 48.5, 98.1 Yes BURPS1710b_1108 Isocitrate dehydrogenase (icd) 3DMS B. pseudomallei BTH_I0759 P50213 31.4, 94.0 Yes BTH_I0848 Pantothenate synthetase (panC) 3UK2 B. thailandensis BTH_I0848 – – Yes BTH_I0860 Deoxycytidine triphosphate deaminase (dcd) 4DHK B. thailandensis BTH_I0860 – – No BURPS1710b_1237 Inorganic pyrophosphatase 6 structures B. pseudomallei BTH_I0878 – – Yes BTH_I0882 Glutamine dependent NAD+ synthetase 4F4H B. thailandensis BTH_I0882 – – Yes BTH_I1058 Triosephosphate isomerase 4G1K B. thailandensis BTH_I1058 P60174 41.5, 99.2 Yes BamMC406_0490 D-alanine–D-alanine ligase (ddl) 4EG0 B. ambifaria BTH_I1120 – – Yes Bxe_A0488 4EGJ B. xenovorans – Yes BTH_I1195 Transketolase (tkt) 3UK1, 3UPT B. thailandensis BTH_I1195 Q53EM5 27.8, 95.8 Yes BTH_I1208 Dihydrodipicolinate reductase 4F3Y B. thailandensis BTH_I1208 – – No BTH_I1214 Gamma-glutamyl phosphate reductase 4GHK B. thailandensis BTH_I1214 P54886 37.8, 96.2 Yes BTH_I1311 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) 3VAV B. thailandensis BTH_I1311 – – Yes BTH_I1489 Phosphoglucomutase 3UW2 B. thailandensis BTH_I1489 – – Yes Bphy_0771 tRNA (guanine-N(1)-)-methyltransferase 4H3Z, 4H3Y B. phymatum BTH_I1663 O75588 84.6, 53.3 Yes BTH_I1680 Thymidylate synthase (thyA) 3V8H B. thailandensis BTH_I1680 Q53Y97 34.6, 99.4 Yes BURPS1710b_0096 3-oxoacyl-ACP synthase III (FabH) 3GWA, 3GWE B. pseudomallei BTH_I1717 – – Yes Bxe_A0096 4EFI B. xenovorans Yes Bxe_A1072 4DFE B. xenovorans Yes BURPS1710b_2906 Acyl-carrier-protein S-malonyltransferase 3EZO B. pseudomallei BTH_I1718 Q8IVS2 32.6, 91.3 Yes BURPS1710b_2905 3-ketoacyl-ACP reductase (fabG) 3FTP B. pseudomallei BTH_I1719 Q92506 43.2, 99.6 Yes BURPS1710b_A1014 Acetoacetyl-CoA reductase 3GK3 B. pseudomallei 37.2, 97.6 Yes Bcep1808_4002 3-oxoacyl-ACP synthase II 4DDO, 4F32 B.vietnamiensis BTH_I1721 Q9NWU1 45.6, 96.1 Yes Bphy_0703 Beta-ketoacyl synthase 4EWG B. phymatum 34.7, 98.8 Yes BURPS1710b_2892 Pyridoxal phosphate biosynthetic protein 3GK0 B. pseudomallei BTH_I1733 – – Yes BTH_I1883 Lysyl-tRNA synthetase (lysS) 4EX5 B. thailandensis BTH_I1883 Q15046 39.3, 97.8 Yes BamMC406_2018 2-dehydro-3-deoxyphospho-octonate aldolase (kdsA) 3T4C B. ambifaria BTH_I1893 – – Yes BCAL2180 3TML B. cenocepacia Yes BURPS1710b_3264 3SZ8, 3TMQ, 3UND B. pseudomallei Yes BURPS1710b_2636 Enoyl-ACP reductase (fabI) 3EK2 B. pseudomallei BTH_I1977 – – Yes BTH_I1984 Glutamyl-tRNA synthetase (gltX) 4G6Z B. thailandensis BTH_I1984 Q5JPH6 35.5, 67.0 Yes BTH_I2038 (3R)-hydroxymyristoyl-ACP dehydratase 4H4G B. thailandensis BTH_I2038 – – Yes BTH_I2039 UDP-N-acetylglucosamine O-acyltransferase 4EQY B. thailandensis BTH_I2039 – – Yes BamMC406_4587 Putative signal-transduction protein with CBS domains 4FRY B. ambifaria BTH_I2056 – – Yes BURPS1710b_2511 # 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 17 structures # B. pseudomallei BTH_I2090 – – Yes BTH_I2154 Thymidylate kinase (tmk) 3V9P B. thailandensis BTH_I2154 – – Yes BTH_I2199 Threonine synthase (thrC) 3V7N B. thailandensis BTH_I2199 Q8N9J5 32.6, 88.4 Yes BTH_I2231 Nucleoside diphosphate kinase 4DUT, 4EK2 B. thailandensis BTH_I2231 Q9NUF9 44.7, 93.6 Yes BTH_I2235 Histidyl-tRNA synthetase (hisS) 4E51 B. thailandensis BTH_I2235 - - Yes BTH_I2245 Adenylosuccinate synthetase 3UE9 B. thailandensis BTH_I2245 Q8N142 42.0, 96.9 Yes BTH_I2516 Ribose-5-phosphate isomerase A 3U7J, 3UW1 B. thailandensis BTH_I2516 P49247 36.2, 95.3 Yes BTH_I3037 GTP-binding protein engB 4DHE B. thailandensis BTH_I3037 Q8N3Z3 30.8, 71.7 Yes BTH_I3304 Uroporphyrinogen decarboxylase 4EXQ B. thailandensis BTH_I3304 P06132 48.5, 98.1 Yes BTH_II0675 Aspartate-semialdehyde dehydrogenase 3UW3 B. thailandensis BTH_II0675 – – Yes BamMC406_2543 Phosphoribosylaminoimidazole carboxylase, ATPase subunit 4E4T B. ambifaria BTH_II0682 – – Yes BTH_II1941 Agmatinase, putative 4DZ4 B. thailandensis BTH_II1941 Q9BSE5 42.5, 88.8 Yes BTH_II2229 Isochorismatase family protein 3TXY B. thailandensis BTH_II2229 – – Yes An expanded version of this table is available in the Supporting Information ( Table S2 ).

Publication Year: 2013