Primary Citation PubMed: 23374340
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
PubMed ID is not available.
Published in 2015
The Thermus thermophilus elemental paused elongation complex (ePEC; PDB: 4GZZ) was docked into the RNAP electron density map by superimposing it onto the previously docked homology model of a B. subti... is elongation complex ( 18 ).
Publication Year: 2015
The structure of an elemental-paused elongation complex using Thermus RNAP and DNA/RNA scaffolds derived from the E. coli his-pause sequence showed a unique RNAP conformation including an open-clamp a... d kinked bridge helix that may inhibit processive RNA extension (PDB: 4GZY, 4GZZ) [ 44 ].
Structure PDB code Reference Source Subunit and domain α subunit NTD 1BDF X [ 7 ] A α subunit NTD 4NOI X none F α subunit CTD 1COO N , 3K4G X [ 5 , 8 ] A α subunit CTD 1DOQ N [ 9 ] B α subunit CTD 2MAX N [ 10 ] E β subunit 2/i4 domains 3LTI X [ 11 ] A β subunit flap domain 2LY7 N none C β subunit 1/2 domains 4KBJ X [ 12 ] I β' subunit i2 domain 2AUJ X [ 13 ] B β' subunit i6 domain 2AUK X , 4IQZ X [ 13 ] A σ region 1.1 2K6X N [ 14 ] G, a σ 70 domain2 1SIG X [ 15 ] A, a σ A domains2 and 3 1KU2 X [ 16 ] B, a σ A domain4 1KU3 X [ 16 ] B, a σ A domain4–DNA (−35 element) 1KU7 X [ 16 ] B, a σ A domain4 1TTY N [ 17 ] G, a σ A domain2–DNA (−10 element) 3UGO X , 3UGP X [ 18 ] B, a σ A domain4–αCTD–DNA 3N97 X none B, a, A σ N RpoN–DNA (−24 element) 2O8K N , 2O9L N [ 19 ] D, d σ N core binding domain 2K9M N [ 20 ] D, d σ N RpoN domain 2AHQ N [ 21 ] D, d σ E domain4–DNA (−35 element) 2H27 X [ 22 ] A, c σ C domain2 2O7G X [ 23 ] I, c σ C domain4 2O8X X [ 23 ] I, c σ D domain4 3VFZ X [ 24 ] I, c δ subunit NTD 2KRC N , 4NC7 X , 4NC8 X , 2M4K N , 2KRC N [ 25 , 26 , 27 ] C ε subunit 4NJC X [ 28 ] C RNAP Core enzyme 1HQM X [ 29 , 30 ] B Core enzyme (Δω subunit) 2GHO X [ 31 ] B Holoenzyme 1L9U X , 1IW7 X , 2A6E X , 2CW0 X [ 32 , 33 , 34 ] B Holoenzyme 4YG2 X , 4LJZ X , 4MEY X [ 35 , 36 , 37 ] A Holoenzyme–DNA (−41 ~ −7) 1L9Z X [ 38 ] B Holoenzyme–DNA (−12 ~ +12) 4G7H X , 4G7O X [ 39 ] B de novo initiation complex 4Q4Z X , 4OIO X [ 40 , 41 ] B Initially transcribing complex 4Q5S X [ 40 ] B Elongation complex 2O5I X , 2O5J X [ 42 , 43 ] B Paused elongation complex 4GZY X , 4GZZ X [ 44 ] B Backtracked elongation complex 4WQS X [ 45 ] B A: Escherichia coli ; B: Thermus aquatics/Thermus thermophilus ; C: Bacillus subtilis/Bacilus stearothermophilus ; D: Aquifex aeolicus ; E: Helicobacter pylori ; F: Campylobacter jejuni ; G: Thermotoga maritime ; I: Mycobacterium tuberculosis ; a: group I σ factor; c: extracytoplasmic function (ECF) σ factor; d: σ N /σ 54 factor; X : X-ray crystallography method; N : NMR method.
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.