Primary Citation PubMed: 23435379
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Crystal structure of oligomeric ?1-adrenergic G protein-coupled receptors in ligand-free basal state.
(2013) Nat Struct Mol Biol 20
PubMed: 23435379 | PubMedCentral: PMC3618578 | DOI: 10.1038/nsmb.2504
Atomic coordinates and structure factor files for the oligomeric turkey β 1 -ARs have been deposited in the Protein Data Bank under ID code 4GPO.
Publication Year: 2013
An analysis of oligomerization interfaces in transmembrane proteins.
(2013) BMC Struct Biol 13
PubMed: 24134166 | PubMedCentral: PMC4015793 | DOI: 10.1186/1472-6807-13-21
core-rim core-surface 2i35 A + A 316.6 0 + 0 2 + 2 105 0.39* -0.20* 2i36 C + C 684.5 1 + 1 1 + 1 105 0.47 (b) -0.35 (x) A... 09;+ B 509.9 1 + 1 2 + 2 105 1.08* 0.50* 2i37 A + B 418.2 0 + 0 2 + 2 105 0.45* -0.23* C + C 413.2 0 + 0 2 + 2 105 0.41* -0.25* 3odu A + B 1209.3(797.9) 0 + 0 52 1.28 (x) 1.55 (x) 3oe0 A + A 1089.4(1086.8) 0 + 0 83 1.55 (x) 1.71 (x) 3oe6 A + A 1037.6(764.8) 0 + 0 94 1.67 (x) 2.80 (x) 3oe8 B + C 665.2(591.9) 0 + 0 3 + 4 83 0.83* 0.32* 3oe9 A + B 959.4(877.4) 0 + 0 102 1.46 (x) 1.70 (x) 4djh A + B 1024.0 1 + 1 106 1.42 (x) 0.85 (x) 4gpo A + B 833.5 0 + 0 71 1.74 (x) 2.79 (x) 4jkv A + B 1237.7 6 + 6 16 0.43 (b) -1.90 (b) 3sn6 A + R 1263.1 2 + 6 103,136 0.34 (b) -2.41 (b) Analysis of a set of class A GPCR dimer interfaces proposed in the literature plus the proposed dimer interface for the human Smoothened receptor [PDB: 4jkv] and the β2 adrenergic receptor to G-protein interface [PDB: 3sn6].
•Turkey β1 adrenergic receptor [PDB: 4gpo] [ 28 ]: in this case the crystallization strategy did not involve engineering of a fusion protein, but a set of stabilizing mutations plus removal of a loop.
A functional selectivity mechanism at the serotonin-2A GPCR involves ligand-dependent conformations of intracellular loop 2.
(2014) J Am Chem Soc 136
PubMed: 25314362 | PubMedCentral: PMC4235374 | DOI: 10.1021/ja508394x
To this end, we used the β 1 adrenergic receptor homodimer as a structural template to construct pseudodimer structures of 5-HT 2A R conformations resulting from our various MD simulations by ... ligning the simulated GPCR structures at each point in time, with each of the β 1 protomers (PDB accession code 4GPO, TM4-TM5-ICL2 interface).
After alignment to the crystal structure of the β 1 adrenergic receptor in its ligand-free form (4GPO.
Publication Year: 2014
PubMed ID is not available.
Published in 2015
The closest structure to the identified TM5/TM5 in μ-OR simulations was the interface termed TM4,5/TM4,5 in the B1AR crystal structure corresponding to PDB code 4GPO (RMSD of 8.82 Å, a... ter overlapping the formed dimer with chain A of 4GPO and its periodic image).
The closest crystal structure to the TM1,2,H8/TM1,2,H8 interface that forms during μ-OR simulations is not the one inferred by the μ-OR crystal structure (4DKL [ 12 ]), but rather the one suggested by a β1-adrenergic receptor (B1AR) crystal structure (4GPO [ 23 ]).
2A , 3A , and 4A show, as an example, the TM1,2,H8/TM1,2,H8 homo-dimer interfaces formed during simulation of δ-OR, κ-OR, and μ-OR, respectively, overlapped onto the closest crystal structures, i.e., 4DJH or 4GPO.
Publication Year: 2015
Dimers of hD 3 with an interface including TMD I were constructed based on those observed in the “dimer” crystal structures of the inactive, mutationally stabilized turkey β 1 ... adrenoreceptor (PDB code 4GPO ) ( 25 ).
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.