Primary Citation PubMed: 23434853
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Allosteric inhibition of hypoxia inducible factor-2 with small molecules.
(2013) Nat Chem Biol 9
PubMed: 23434853 | PubMedCentral: PMC3604136 | DOI: 10.1038/nchembio.1185
PDB code: 4GHI Competing financial interests R.K.B., K.H.G., T.H.S., J.K. and U.K.T. have received stock options and other financial compensation from Peloton Therapeutics Inc. 1 Semenza GL Hypoxia-in... ucible factors: mediators of cancer progression and targets for cancer therapy Trends Pharmacol Sci 33 207 214 2012 22398146 2 Xia X Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis Proc Natl Acad Sci U S A 106 4260 4265 2009 19255431 3 Schodel J High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq Blood 117 e207 217 2011 21447827 4 Majmundar AJ Wong WJ Simon MC Hypoxia-inducible factors and the response to hypoxic stress Mol Cell 40 294 309 2010 20965423 5 Greer SN Metcalf JL Wang Y Ohh M The updated biology of hypoxia-inducible factor EMBO J 31 2448 2460 2012 22562152 6 Kondo K Kim WY Lechpammer M Kaelin WG Jr Inhibition of HIF2alpha is sufficient to suppress pVHL-defective tumor growth PLoS Biol 1 E83 2003 14691554 7 Kondo K Klco J Nakamura E Lechpammer M Kaelin WG Jr Inhibition of HIF is necessary for tumor suppression by the von Hippel-Lindau protein Cancer Cell 1 237 246 2002 12086860 8 Maranchie JK The contribution of VHL substrate binding and HIF1-alpha to the phenotype of VHL loss in renal cell carcinoma Cancer Cell 1 247 255 2002 12086861 9 Erbel PJ Card PB Karakuzu O Bruick RK Gardner KH Structural basis for PAS domain heterodimerization in the basic helix--loop--helix-PAS transcription factor hypoxia-inducible factor Proc Natl Acad Sci U S A 100 15504 15509 2003 14668441 10 Yang J Functions of the Per/ARNT/Sim (PAS) domains of the hypoxia inducible factor (HIF) J Biol Chem 280 36047 36054 2005 16129688 11 Partch CL Card PB Amezcua CA Gardner KH Molecular basis of coiled coil coactivator recruitment by the aryl hydrocarbon receptor nuclear translocator (ARNT) J Biol Chem 284 15184 15192 2009 19324882 12 Partch CL Gardner KH Coactivators necessary for transcriptional output of the hypoxia inducible factor, HIF, are directly recruited by ARNT PAS-B Proc Natl Acad Sci U S A 108 7739 7744 2011 21512126 13 Henry JT Crosson S Ligand-binding PAS domains in a genomic, cellular, and structural context Annu Rev Microbiol 65 261 286 2011 21663441 14 Harper SM Neil LC Gardner KH Structural basis of a phototropin light switch Science 301 1541 1544 2003 12970567 15 Wells JA McClendon CL Reaching for high-hanging fruit in drug discovery at protein-protein interfaces Nature 450 1001 1009 2007 18075579 16 Koehler AN A complex task?
The final structural model was refined with an occupancy of compound (2) at 0.7, with final refinement statistics are presented in Supplementary Table 2 (coordinates deposited at RCSB with PDB code 4GHI).
Publication Year: 2013
Protein dynamics of the HIF-2? PAS-B domain upon heterodimerization and ligand binding.
(2014) PLoS One 9
PubMed: 24736273 | PubMedCentral: PMC3988133 | DOI: 10.1371/journal.pone.0094986
In spite of these remarkable results, the recently reported crystal structure of a high affinity mutant heterodimer (HIF-2α PAS-B R247E/HIF-1β PAS-B E362R) bound to compound 32 (PDB co... e: 4GHI  , Figure S1B in File S1 ) was similar to its apo form (3F1P  , Cα RMSD lower than 0.3 Å).
Since 3F1P and 4GHI are crystal structures of a high affinity mutant heterodimer (HIF-2α PAS-B R247E/HIF-1β PAS-B E362R), the wild type forms were reconstructed by retro-mutating aminoacid 247 and 362 by using the Schrödinger suite of programs  ( Figure 1B ).
Publication Year: 2014
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.