Citations in PubMed

Primary Citation PubMed: 22999886 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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In silico investigation of potential pyruvate kinase M2 regulators from traditional Chinese medicine against cancers.

(2014) Biomed Res Int 2014

PubMed: 25089263 | PubMedCentral: PMC4096393 | DOI: 10.1155/2014/189495

Data Collection The X-ray crystallography structure of the human pyruvate kinase M2 (PKM2) was downloaded from RCSB Protein Data Bank with PDB ID: 4G1N [ 9 ].

Publication Year: 2014


Combining structure-based pharmacophore modeling, virtual screening, and in silico ADMET analysis to discover novel tetrahydro-quinoline based pyruvate kinase isozyme M2 activators with antitumor activity.

(2014) Drug Des Devel Ther 8

PubMed: 25214764 | PubMedCentral: PMC4159224 | DOI: 10.2147/DDDT.S62921

Table 1 Analyses of critical amino acids and pharmacophore features from seven PKM2-activators’ co-crystal structures deposited in the Protein Data Bank PDB Number 3GR4 3GQY 3U2Z 3H6O 3ME3 4G1... 4JPG Resolution 1.60 Å 1.85 Å 2.10 Å 2.00 Å 1.95 Å 2.30 Å 2.33 Å Ligand DYY DZG 07T D8G 3SZ NZT 1OX Release date April 7, 2009 April 7, 2009 December 9, 2012 May 5, 2009 April 28, 2010 October 10, 2012 May 22, 2013 Interception residue A: Phe26 A: Phe26 A: Phe26 A: Phe26 A: Phe26 A: Phe26 A: Phe26 A: Leu27 A: Leu27 A: Leu27 – – – A: His29 A: Met30 A: Met30 A: Met30 – – A: Met30 – A: Asn318 – – A: Asn318 – A: Leu353 A: Leu353 – A: Leu353 A: Leu353 A: Leu353 A: Leu353 – A: Asp354 – – A: Asp354 A: Asp354 – – – – – A: Ile389 A: Ile389 A: Tyr390 A: Tyr390 A: Tyr390 A: Tyr390 A: Tyr390 A: Tyr390 A: Tyr390 A: Gln393 A: Gln393 A: Gln393 A: Gln393 A: Gln393 A: Gln393 A: Leu394 A: Leu394 A: Leu394 A: Leu394 A: Leu394 A: Leu394 A: Glu397 A: Glu397 – A: Glu397 A: Glu397 A: Glu397 B: Phe26 B: Phe26 B: Phe26 B: Phe26 B: Phe26 B: Phe26 B: Phe26 – B: Leu27 – B: Leu27 B: Leu27 B: Leu27 B: Met30 B: Met30 – – B: Met30 B: Met30 B: Lys311 B: Lys311 B: Asn318 – – – – – B: Leu353 B: Leu353 – – B: Leu353 B: Leu353 B: Asp354 B: Asp354 B: Asp354 – B: Asp354 B: Asp354 B: Tyr390 B: Tyr390 B: Tyr390 B: Tyr390 B: Tyr390 B: Tyr390 B: Gln393 B: Gln393 B: Gln393 B: Gln393 B: Gln393 B: Gln393 B: Gln393 B: Leu394 B: Leu394 B: Leu394 B: Leu394 B: Leu394 B: Leu394 B: Glu397 B: Glu397 B: Glu397 – B: Glu397 – Pharmacophore model features Ar1 √ √ √ √ √ √ √ Ar2 √ √ √ √ √ Ar3 √ Ar4 √ HP1 √ √ √ √ √ HP2 √ √ HP3 √ √ Donor 1 √ Donor 2 √ Acceptor 1 √ √ Acceptor 2 √ Abbreviations: PDB, Protein Data Bank; Ar, aromatic rings; HP, hydrophobic features; PKM, pyruvate kinase isozyme.

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4400313

The crystal structure of PKM2 with N-(4-{[4-(pyrazin-2-yl)piperazin-1-yl]carbonyl}phenyl)quinoline-8-sulfonamide (Protein Data Bank code: 4G1N) bound in the allosteric binding site was used as a start... ng model for the virtual screening.

Publication Year: 2015