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Structures of the Escherichia coli transcription activator and regulator of diauxie, XylR: an AraC DNA-binding family member with a LacI/GalR ligand-binding domain.

(2013) Nucleic Acids Res 41

PubMed: 23241389 | PubMedCentral: PMC3561964 | DOI: 10.1093/nar/gks1207

Selected crystallographic data for XylR structures Selenomethionine MAD data for XylR– d -xylose     Energy (keV) 12678.8/peak 12676.8/inflection 12979.6/remote...     Resolution (Å) 107.83-2.90 107.83-2.90 107.83-2.90     Overall R sym (%) a 7.5 (36.6) b 7.5 (36.2) 7.9 (38.5)     Overall I/σ(I) 30.2 (8.0) 29.9 (8.0) 29.2 (7.6)     #Total reflections 196 548 196 226 196 403     #Unique reflections 12 701 12 729 12 704     Multiplicity 8.6 8.5 8.6     Overall Figure of Merit c 0.67 Refinement statistics     Structure/pdb ID code XylR– d -xylose/4FE7 apo XylR/4FE4     Resolution (Å) 66.67-2.90 107.83-3.40     Overall R sym (%) a 7.9 (38.5) 11.7 (49.6)     Overall I/σ(I) 29.2 (7.6) 7.0 (1.7)     #Total reflections 196 403 22 188     #Unique reflections 12 022 2286     % complete 100 (100) 97.0 (98.5)     R work /R free (%) d 21.9/27.9 28.9/31.6     Rmsd     Bond angles (°) 1.275 1.60     Bond lengths (Å) 0.010 0.011     Ramachandran analysis     Most favoured (%) 89.4 78.9     Additional allowed (%) 10 20.2     Generously allowed (%) 0.6 0.9     Disallowed (%) 0.0 0.0 a R sym = ΣΣ|Ihkl−Ihkl(j)|/ΣIhkl, where Ihkl(j) is observed intensity and Ihkl is the final average value of intensity.

ACCESSION NUMBERS Coordinates and structure factor amplitudes for the apo XylR and XylR- d -xylose structures have been deposited with the Protein Data Bank under the accession codes 4FE4 and 4FE7, respectively.

Publication Year: 2013