Primary Citation PubMed: 23288897
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Structural and biochemical characterization of the Cop9 signalosome CSN5/CSN6 heterodimer.
(2014) PLoS One 9
PubMed: 25144743 | PubMedCentral: PMC4140821 | DOI: 10.1371/journal.pone.0105688
Two docking pairs of protein models were used for docking simulations: (i) the CSN5 ΔC (chain A, PDB code: 4F7O), with Ins-1 segment (residues 98–132) fitted to the corresponding ubiqu... tin-liganded AMSH-LP Ins-1 structure (AMSH-LP structure corresponds to the MPN domain: residues 264–436; PDB code 2ZNV) using MODELLER9 program, followed by manual fitting (to avoid steric clash with the C-terminal LRGG residues of ubiquitin from AMSH-LP distal ubiquitin), combined with the 38–191 CSN6 fragment (α4 deletion; referred to as CSN6 ΔC,Δα4 ); and (ii) the same CSN5 ΔC model with the N- and C-terminal appending segments removed (residues 2–31 and 232–257; referred to as CSN5 ΔC,Δ2–31,Δ232–257 ) combined with CSN6 ΔC,Δα4 (residues 38–207).
To the individual subunit models of the initial CSN model, were substituted updated models of the following subunits generated by Phyre  : CSN1 (modelled on a partial crystal structure of the Arabidopsis thaliana ( At ) protein; PDB code 4LCT;  ); CSN5 (modelled on the CSN5 ΔC crystal structure; PDB code 4F7O;  ); CSN6 (modelled on the CSN6 ΔC crystal structure; this work); CSN7 (modelled on a partial crystal structure of the At protein; PDB code 3CHM;  ); CSN8 (modelled on the crystal structure of eIF3k; PDB code 1RZ4;  ).
Publication Year: 2014
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.