Primary Citation PubMed: 22993082
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Investigation of the interaction of naringin palmitate with bovine serum albumin: spectroscopic analysis and molecular docking.
(2013) PLoS One 8
PubMed: 23527100 | PubMedCentral: PMC3604151 | DOI: 10.1371/journal.pone.0059106
Molecular Modeling and Docking The crystal structure of BSA was obtained from the Protein Data Bank (entry code 4F5S)  .
Publication Year: 2013
A comparative study of interaction of tetracycline with several proteins using time resolved anisotropy, phosphorescence, docking and FRET.
PubMed: 23593355 | PubMedCentral: PMC3623961 | DOI: 10.1371/journal.pone.0060940
2.5 Docking Studies The crystal structure of HSA (PDB entry 1AO6) and BSA (PDB entry 4F5S) were downloaded from the Protein Data Bank.
Cross-link guided molecular modeling with ROSETTA.
PubMed: 24069194 | PubMedCentral: PMC3775805 | DOI: 10.1371/journal.pone.0073411
UniProt Entry name PDB-ID –Chain ID Template PDB-ID –Chain ID Sequence Identity between UniProtand TemplateSequence [%] Number of experimental XLs Number of satisfied XLs Min RMSD Min ... MSDwith XLs Score of min RMSD with XLs Rank of min RMSD with XLs KPYM_RABIT 2G50-A 4IMA-A 68.5 16 12 1.3 1.4 −1145.1 1 KCRM_RABIT 1U6R-A 1QH4-A 80.8 19 18 2.2 2.2 −808.4 1 ALDOA_RABIT 3DFQ-A 1FDJ-A 71 19 9 2.4 2.4 −709.7 1 CATA_BOVIN 4BLC-A 1QQW-A 92 2 2 2.7 2.7 −1016.8 1 ALBU_BOVIN 4F5S - A 1N5U-A 75.9 55 49 3.2 3.2 −1178.2 2 TRFL_BOVIN 1BLF-A 1AIV-A 52.3 31 21 5.3 8.5 −927.7 86 Median 2.55 2.55 1 For more information regarding the columns, see Table 1 .
Fibrinogen species as resolved by HPLC-SAXS data processing within the UltraScan Solution Modeler (US-SOMO) enhanced SAS module.
(2013) J Appl Crystallogr 46
PubMed: 24282333 | PubMedCentral: PMC3831300 | DOI: 10.1107/S0021889813027751
In the graphic windows, the I ( q ) versus q and the P ( r ) versus r curves computed from the BSA crystal structure 4f5s (Bujacz, 2012 ▶ ) using Crysol and the US-SOMO internal SAXS method, r... spectively, are shown.
Predicting the activity coefficients of free-solvent for concentrated globular protein solutions using independently determined physical parameters.
PubMed: 24324733 | PubMedCentral: PMC3852980 | DOI: 10.1371/journal.pone.0081933
For BSA, three molecular structures are available (two in the Protein Data Bank (PDB: 3V03  and 4F5S  ) and a homology model (based on human serum albumin (PDB: 1BM0  )  ).
Crystallization Solution Properties of Bovine Serum Albumin Herein, the BSA molecular structure, based on the homology model, was used for calculating the SASA due to the experimental conditions used for the crystallization of the molecular structures available in the Protein Data Bank for BSA (PDB: 3V03 and 4F5S).
Both of the structures were crystallized at pH 6.5 in polyethylene glycol (PEG) solutions: 20% (w/v) PEG 3350 (PDB: 3V03) and 20 – 24% (w/v) PEG monomethyl ether (MME) 5000 (PDB: 4F5S).
Access of hydrogen-radicals to the peptide-backbone as a measure for estimating the flexibility of proteins using matrix-assisted laser desorption/ionization mass spectrometry.
(2014) Int J Mol Sci 15
PubMed: 24828203 | PubMedCentral: PMC4057740 | DOI: 10.3390/ijms15058428
The inset represents tertiary structure obtained by X-ray crystallography (PDB: 4F5S).
Publication Year: 2014
Lysine pyrrolation is a naturally-occurring covalent modification involved in the production of DNA mimic proteins.
(2014) Sci Rep 4
PubMed: 24938734 | PubMedCentral: PMC4061549 | DOI: 10.1038/srep05343
The surface electric potential was calculated from the coordinate of the BSA structure (PDB: 4F5S) using the MOE.
PyTMs: a useful PyMOL plugin for modeling common post-translational modifications.
(2014) BMC Bioinformatics 15
PubMed: 25431162 | PubMedCentral: PMC4256751 | DOI: 10.1186/s12859-014-0370-6
Here, we restricted modification to surface-exposed Lysine epsilon amine groups in a model of Bovine Serum Albumin (BSA, [PDB: 4F5S]), using a cutoff of 25 Å 2 .
Computational investigation of inhibitory mechanism of flavonoids as bovine serum albumin anti-glycation agents.
(2014) Daru 22
PubMed: 25498599 | PubMedCentral: PMC4272557 | DOI: 10.1186/s40199-014-0079-0
Figure 10 The superimposition between crystallographic structure of bovine serum albumin (PDB ID: 4F5S) (orange) and calculated 3D structure model (yellow), obtained with Swiss PDB viewer software.
Development and application of a label-free fluorescence method for determining the composition of gold nanoparticle-protein conjugates.
(2014) Int J Mol Sci 16
PubMed: 25561238 | PubMedCentral: PMC4307282 | DOI: 10.3390/ijms16010907
The PDB codes were as follows: IgG, 1IGY; BSA, 4F5S; STI, 1AVU; and protein G (IgG-binding fragment), 1PGB.
In Vitro Selection of a Single-Stranded DNA Molecular Recognition Element against Clostridium difficile Toxin B and Sensitive Detection in Human Fecal Matter.
(2015) J Nucleic Acids 2015
PubMed: 25734010 | PubMedCentral: PMC4334984 | DOI: 10.1155/2015/808495
((b), (c), (d), and (e)) Ribbon structure of Pseudomonas aeruginosa exotoxin A (PDB 1IKQ, 66 kDa) [ 55 ], bovine serum albumin (PDB 4F5S, 66.5 kDa) [ 56 ], Vibrio cholerae cholera toxi... (PDB 2A5D, 84 kDa) [ 57 ], and Staphylococcus aureus alpha toxin (PDB 3ANZ, 33 kDa) [ 58 ], used in negative rounds of selection and cross binding assays.
Publication Year: 2015
PubMed ID is not available.
Published in 2015
( A ) Ribbon structure of the target of interest, alpha toxin (PDB 3ANZ, 33 kDa) [ 44 ]; ( B – E ) Ribbon structure of exotoxin A (PDB 1IKQ, 66 kDa) [ 45 ], bovine serum albumin (PDB 4F5S, 66.... kDa) [ 46 ], cholera toxin (PDB 2A5D, 84 kDa) [ 47 ], and toxin B (PDB2BVM, 270 kDa) [ 48 ], used in negative rounds of selection and cross binding assays.
A crystal structure of BSA (PDB ID: 4F5S 48 ) was used to initialize BSA configurations.
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