Primary Citation PubMed: 9760165
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Lignin triggers irreversible cellulase loss during pretreated lignocellulosic biomass saccharification.
(2014) Biotechnol Biofuels 7
PubMed: 25530803 | PubMedCentral: PMC4272552 | DOI: 10.1186/s13068-014-0175-x
CBMs for CBH I [PDB:1cbh] and EG I [PDB:4bmf] were scored from previously solved structures.
Publication Year: 2014
PubMed ID is not available.
Published in 2014
Molecular modeling A PSI-BLAST (Position-Specific Iterated Basic Local Alignment Search Tool) [ 39 ] search with default parameters was performed against the Protein Data Bank (PDB), and GH10 xylanase... from Fusarium oxysporum (PDB code 3U7B [ 5 ]) and a cellulose-binding domain (CBD) of endoglucanase I from Trichoderma reesei (PDB code 4BMF [ 20 ]) were selected for building a structural model of the XYN10A by comparative modeling techniques with the program MODELLER9v12 [ 40 ].
MpXyn10A also has a cellulose-binding domain, and for this the cellulose-binding module (CBM1) of the endoglucanase I from Trichoderma reesei (PDB code 4BMF [ 20 ]) was used as a template.
The templates thus identified, GH10 XYLANASE from Fusarium oxysporum (PDB code 3U7B [ 5 ]) and a cellulose-binding domain (CBD) of endoglucanase I from Trichoderma reesei (PDB code 4BMF [ 11 ]) were used for building a structural model of the XYN10A by comparative modeling techniques with the program MODELLER9v12 [ 21 ].
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