Citations in PubMed

Primary Citation PubMed: 23023261 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Discovery of an allosteric mechanism for the regulation of HCV NS3 protein function.

(2012) Nat Chem Biol 8

PubMed: 23023261 | PubMedCentral: PMC3480716 | DOI: 10.1038/nchembio.1081

The pdb accession codes for the complex structures are 4b6e, 4b6f, 4b76, 4b71,4b73 and 4b74 for compounds 1-6 in the wildtype enzyme respectively, and 4b75 for compound 5 in the Val630Leu mutant enzym... .

Publication Year: 2012

Computational study on the inhibitor binding mode and allosteric regulation mechanism in hepatitis C virus NS3/4A protein.

(2014) PLoS One 9

PubMed: 24586263 | PubMedCentral: PMC3934852 | DOI: 10.1371/journal.pone.0087077

systems simulation time starting structure apo protein 100 ns X-ray structure of HCV NS3/4A protein (PDB ID code 1CU1) inhibitor bound protein 100 ns X-ray structure of HCV NS3/4A protein complexed wi... h inhibitor (PDB ID code 4B73) apo protein (truncated) 100 ns removal of the six C-terminal residues from apo protein inhibitor bound protein(truncated) 100 ns removal of the six C-terminal residues from protein complexed with inhibitor All the structures were then modeled by using the program LEaP embedded in AMBER10 [35] with the standard AMBER03 force field [36] for protein, including adding all missing hydrogen atoms of the protein.

The simulations of the X-ray crystal structure of 1CU1 [16] and 4B73 [11] were designed to prove the importance of the stability of an autoinhibited form of HCV NS3/4A protein by a small molecular binding at the novel allosteric site.

As shown in Table 1 , the truncated forms of HCV NS3/4A protein models were created by in silico removing the six C-terminal residues coordinates starting from above structures 1CU1 and 4B73.

Publication Year: 2014