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Published in 2015

PubMedCentral: PMC4356360

Table 4 Relative Gibbs free energies of the conformers of ( R )- and ( S )-MPD extracted from the PDB Conformer G (kJmol 1 ), 300K 1a 0.00 2a 3.70 3a 4.71 3c 6.99 1b 7.33 1c 7.33 2c 7.33 2b 7.71 3b 8.... 2 Table 5 Crystallographic data and refinement statistics PDB entry 4b49 4b4e 4b4i 4b4j MPD added None ( R ) ( S ) ( RS ) Data collection Space group P 4 3 2 1 2 P 4 3 2 1 2 P 4 3 2 1 2 P 4 3 2 1 2 Unit-cell parameters a = b () 76.84 77.53 77.44 77.67 c () 38.69 37.89 37.94 37.70 = = () 90 90 90 90 Resolution † () 20.001.15 (1.171.15) 15.001.00 (1.021.00) 30.001.20 (1.221.20) 30.001.25 (1.271.25) Total reflections 562743 853125 512028 456741 Unique reflections † 41718 (2040) 62397 (3076) 36597 (1806) 32449 (1584) R merge † 0.08 (0.76) 0.07 (0.82) 0.08 (0.79) 0.06 (0.56) I /( I ) † 41.5 (3.2) 43.3 (2.5) 45.1 (3.6) 45.9 (5.5) Completeness † (%) 99.8 (99.1) 99.3 (99.0) 99.7 (100.0) 99.8 (99.6) Multiplicity † 13.5 (10.9) 13.7 (11.2) 14.0 (12.7) 14.1 (13.2) Mosaicity () 0.32 0.26 0.46 0.43 Overall B factor ( 2 ) 15.5 13.4 17.2 15.1 V M ( 3 Da 1 ) 2.03 2.03 2.03 2.03 Solvent content (%) 39.6 39.6 39.4 39.3 Refinement Resolution † () 18.671.15 (1.181.15) 13.301.00 (1.031.00) 21.491.20 (1.231.20) 27.051.25 (1.281.25) Reflections [ R cryst + R free (5%)] 39425 + 2089 59136 + 3155 34682 + 1825 30732 + 1643 R cryst / R free † (%) 12.7/15.1 (22.2/25.6) 12.4/14.4 (25.0/25.7) 12.9/16.7 (18.8/22.1) 13.05/15.57 (18.1/22.7) No.

Supplementary Material PDB reference: lysozyme, crystallized with ( RS )-2-methyl-2,4-pentanediol, 4b4j PDB reference: crystallized with ( R )-2-methyl-2,4-pentanediol, 4b4e PDB reference: crystallized with ( S )-2-methyl-2,4-pentanediol, 4b4i PDB reference: crystallized without 2-methyl-2,4-pentane­diol, 4b49 Supplementary Material.

‡ Atom OXT (residue Leu129) was omitted during the refinement for structures 4b4e and 4b4j .

Publication Year: 2015