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PDB ID Mentions in PubMed Central Article count: 1

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PDB ID Mentions in PubMed Central

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Three-dimensional electron crystallography of protein microcrystals.

(2013) Elife 2

PubMed: 24252878 | PubMedCentral: PMC3831942 | DOI: 10.7554/eLife.01345

DOI: http://dx.doi.org/10.7554/eLife.01345.011 10.7554/eLife.01345.011 The structure of lysozyme was solved at 2.9 Å resolution by molecular replacement (MR) using the lysozyme PDB 4AXT ( Cipr... ani et al., 2012 ) as a search model.

Molecular replacement was performed with both the full model of lysozyme (PDB 4AXT , top panels) as well as a poly-alanine model (bottom panels) and the resulting 2F obs −F calc maps around residues 1–20 are shown.

Models for molecular replacement validation DOI: http://dx.doi.org/10.7554/eLife.01345.016 Protein PDB ID Molecular weight (kDa) Symmetry Unit cell dimensions MR solution Hen Egg White Lysozyme * 4AXT 14.3 P4 3 2 1 2 a = b = 78.24 Å Yes c = 37.47 Å α = β = γ = 90° T4 Lysozyme † 2LZM 18.7 P3 2 12 a = b = 61.20 Å No c = 96.80 Å α = β = 90° γ = 120° Calmodulin ‡ 3CLN 16.7 P1 a = 29.71 Å, No b = 53.79 Å, c = 24.99 Å α = 94.13°, β = 97.57°, γ = 89.46° Dodecin § 4B2J 8.5 F4 1 32 a = b = c = 142.90 Å No α = β = γ = 90° αA Crystallin # 3L1E 11.9 P4 1 2 1 2 a = b = 56.22 Å, No c = 68.66 Å α = β = γ = 90° * Cipriani et al. (2012) .

Structure refinement Phaser ( McCoy et al., 2007 ) was used to obtain phases with lysozyme structure 4AXT ( Cipriani et al., 2012 ) as a MR search model (LLG = 372 and TFZ = 14.7).

Publication Year: 2013