Citations in PubMed

Primary Citation PubMed: 23902768 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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The carbohydrate-active enzymes database (CAZy) in 2013.

(2014) Nucleic Acids Res 42

PubMed: 24270786 | PubMedCentral: PMC3965031 | DOI: 10.1093/nar/gkt1178

Examples of carbohydrate ligands treated manually Category Common name Display in CAZy structure pages Example of PDB file Nonreducing oligosaccharides α-cyclodextrin α-cyclodextrin 3E... F β-cyclodextrin β-cyclodextrin 3CGT Sucrose α-D-Glcp-(1-2)-β-D-Fruf 4FFH Raffinose α-D-Galp-(1-6)-α-D-Glcp-(1-2)-β-D-Fruf 1W2T Kestose α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf 3LDR Nystose α-D-Glcp-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf-(1-2)-β-D-Fruf 3LEM Thio-oligosaccharides Thio-cellobiose β-D-Glcp-(1-4)-β-D-Glcp4S 4IPM Thio-laminaribiose β-D-Glcp-(1-3)-β-D-Glcp3S 1J8V Thio-xylopentaose β-D-Xylp-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)-β-D-Xylp4S-(1-4)- β-D-Xylp4S 3CUJ α-methyl-thio-cellopentaoside β-D-Glcp-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)-β-D-Glcp4S-(1-4)- α-D-Glcp4S-(1-1)-methyl 1H5V Fluoro-oligosaccharides 5-fluoro-β-D-glucose β-D-Glcp5F 4AMX 2-deoxy-2-fluoro-α-D-glucose α-D-Glcp2F 1UYQ 5-fluoro-β-D-xylose β-D-Xylp5F 2XVK 3,6-anhydro oligosaccharides Neoagarohexaose α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp 2CDO Porphyran/agarose hexasaccharide α-L-Galp6SO3-(1-3)-α-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-Galp6SO3-(1-3)-α-D-Galp 4AW7 Agarooctaose α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)- β-D-Galp-(1-4)-α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp-(1-4)- α-L-3,6-anhydro-Galp-(1-3)-β-D-Galp 4ATF Acarbose and its derivatives Acarbose <non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp 3ZOA Acarbose-derived trisaccharide <non_carb>-(1-4)-α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp 1XCW Acarbose-derived pentasaccharide α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-<non_carb>-(0-4)- α-D-6-deoxy-Glcp4N-(1-4)-α-D-Glcp-(1-4)-β-D-Glcp 1PIG As of September 2013, >1400 CAZymes and modules thereof have a known 3D structure, corresponding to almost 6000 PDB entries out of which ∼1500 carbohydrate (or carbohydrate analogue) ligands are now identified and presented in the structure tab of each CAZy family.

Publication Year: 2014