Primary Citation PubMed: 21764580
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Prediction of molecular targets of cancer preventing flavonoid compounds using computational methods.
(2012) PLoS One 7
PubMed: 22693608 | PubMedCentral: PMC3365021 | DOI: 10.1371/journal.pone.0038261
Protein PDB ID Ligand Code Shape SimilarityScore Reported Inhibitor Average SimilarityScore Hits Pim-1 2O3P QUE 0.90 yes 0.82 8 ** 2O63 MYC 0.88 yes 2O64 MYU 0.86 yes GSK-3β 3D... 8 553 0.83 yes 0.79 5 ** 1Q41 IXM 0.80 yes 3ZRL ZRL 0.78 yes PI3-K * 3PRZ 3RZ 0.81 yes 0.77 6 ** 3DPD 41A 0.79 yes 3PS6 3PS 0.78 yes Cdk2 1E1V CMG 0.83 yes 0.76 16 ** 1H0W 207 0.82 yes 1E1X NW1 0.80 yes Raf * 3PPJ FOI 0.73 yes 0.72 2 3C4C 324 0.71 yes MEK1 * 3EQH ADP 0.71 yes 0.71 1 * , Protein targets that been validated in our laboratory.
Publication Year: 2012
Drug activity prediction using multiple-instance learning via joint instance and feature selection.
(2013) BMC Bioinformatics 14 Suppl 14
PubMed: 24267824 | PubMedCentral: PMC3850986 | DOI: 10.1186/1471-2105-14-S14-S16
Receptor grid preparation We downloaded a set of 20 PDB structural files of GSK-3 β from the RCSB Protein DataBank (PDB) [ 29 ] (PDB IDs: 1H8F, 109U, 1Q3D, 1Q3W, 1Q4L, 1Q5K, 1Q41, 1R0E, 1UV5, ... O5K, 2OW3, 3DU8, 3F7Z, 3F88, 3GB2, 3I4B, 3Q3B, 3ZRK, 3ZRL, and 3ZRM).
Publication Year: 2013
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