Citations in PubMed

Primary Citation PubMed: 23314154 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of ?-factor activity by proteolysis.

(2013) Nucleic Acids Res 41

PubMed: 23314154 | PubMedCentral: PMC3597663 | DOI: 10.1093/nar/gks1468

Data, phasing and refinement statistics Crystal σ D 4 σ D 4 /RsdA PDB ID 3VFZ 3VEP Wavelength (Å) 0.978 0.978 Resolution (Å) a 33.88–1.90 (2.0–1.9) 49.8... –2.5 (2.64–2.50) Unit cell parameters (Å) a = 80.43, b = 35.70, c = 50.92 a = 99.74, b = 110.72, c = 73.13 β = 122.59 β = 133 Space group C121 C121 Total number of reflections a 69 206 (10 166) 139 525 (22 123) Number of unique reflections a 9711 (1422) 18 114 (2855) Completeness (%) a 99.6 (99.6) 98.3 (97.9) Multiplicity a 7.1 (7.1) 7.7 (7.7) R merge (%) a , b 6.2 (58.8) 6.8 (44.2) <I>/σ(I) a 17.9 (3.4) 15.6 (4.4) II.

ACCESSION NUMBERS 3VFZ, 3VEP.

Publication Year: 2013


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4496699

Structure PDB code Reference Source Subunit and domain α subunit NTD 1BDF X [ 7 ] A α subunit NTD 4NOI X none F α subunit CTD 1COO N , 3K4G X [ 5 , 8 ] A α subunit CTD ... DOQ N [ 9 ] B α subunit CTD 2MAX N [ 10 ] E β subunit 2/i4 domains 3LTI X [ 11 ] A β subunit flap domain 2LY7 N none C β subunit 1/2 domains 4KBJ X [ 12 ] I β' subunit i2 domain 2AUJ X [ 13 ] B β' subunit i6 domain 2AUK X , 4IQZ X [ 13 ] A σ region 1.1 2K6X N [ 14 ] G, a σ 70 domain2 1SIG X [ 15 ] A, a σ A domains2 and 3 1KU2 X [ 16 ] B, a σ A domain4 1KU3 X [ 16 ] B, a σ A domain4–DNA (−35 element) 1KU7 X [ 16 ] B, a σ A domain4 1TTY N [ 17 ] G, a σ A domain2–DNA (−10 element) 3UGO X , 3UGP X [ 18 ] B, a σ A domain4–αCTD–DNA 3N97 X none B, a, A σ N RpoN–DNA (−24 element) 2O8K N , 2O9L N [ 19 ] D, d σ N core binding domain 2K9M N [ 20 ] D, d σ N RpoN domain 2AHQ N [ 21 ] D, d σ E domain4–DNA (−35 element) 2H27 X [ 22 ] A, c σ C domain2 2O7G X [ 23 ] I, c σ C domain4 2O8X X [ 23 ] I, c σ D domain4 3VFZ X [ 24 ] I, c δ subunit NTD 2KRC N , 4NC7 X , 4NC8 X , 2M4K N , 2KRC N [ 25 , 26 , 27 ] C ε subunit 4NJC X [ 28 ] C RNAP Core enzyme 1HQM X [ 29 , 30 ] B Core enzyme (Δω subunit) 2GHO X [ 31 ] B Holoenzyme 1L9U X , 1IW7 X , 2A6E X , 2CW0 X [ 32 , 33 , 34 ] B Holoenzyme 4YG2 X , 4LJZ X , 4MEY X [ 35 , 36 , 37 ] A Holoenzyme–DNA (−41 ~ −7) 1L9Z X [ 38 ] B Holoenzyme–DNA (−12 ~ +12) 4G7H X , 4G7O X [ 39 ] B de novo initiation complex 4Q4Z X , 4OIO X [ 40 , 41 ] B Initially transcribing complex 4Q5S X [ 40 ] B Elongation complex 2O5I X , 2O5J X [ 42 , 43 ] B Paused elongation complex 4GZY X , 4GZZ X [ 44 ] B Backtracked elongation complex 4WQS X [ 45 ] B A: Escherichia coli ; B: Thermus aquatics/Thermus thermophilus ; C: Bacillus subtilis/Bacilus stearothermophilus ; D: Aquifex aeolicus ; E: Helicobacter pylori ; F: Campylobacter jejuni ; G: Thermotoga maritime ; I: Mycobacterium tuberculosis ; a: group I σ factor; c: extracytoplasmic function (ECF) σ factor; d: σ N /σ 54 factor; X : X-ray crystallography method; N : NMR method.

Publication Year: 2015