Citations in PubMed

Primary Citation PubMed: 23696816 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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In silico driven redesign of a clinically relevant antibody for the treatment of GD2 positive tumors.

(2013) PLoS One 8

PubMed: 23696816 | PubMedCentral: PMC3656052 | DOI: 10.1371/journal.pone.0063359

The final model was deposited in the Protein Data Bank (access code 3VFG).

Publication Year: 2013

Structure Based Refinement of a Humanized Monoclonal Antibody That Targets Tumor Antigen Disialoganglioside GD2.

(2014) Front Immunol 5

PubMed: 25177320 | PubMedCentral: PMC4132262 | DOI: 10.3389/fimmu.2014.00372

The crystal structure of m3F8 Fab (pdb 3VFG) and the homology model of hu3F8 Fab were simulated using CHARMm (CHemistry at Harvard Molecular mechanics) force fields, and the effects of point mutations... were calculated from the difference between the folding free energies of the mutated structure and the parental protein.

Results Design of constructs V3 and V5 Constructs V3 and V5 (see Figure 1 ) were designed utilizing completely in silico methods, based on both the crystal structure of murine 3F8 Fab (pdb 3VFG) and a homology model of hu3F8 Fab that was built using MODELLER followed by CHARMm energy minimizations.

We have previously solved the crystal structure of murine 3F8 to 1.65 Å resolution (protein data bank 3VFG) and used completely in silico methods to find a single point mutation (HC:G54I) that could significantly enhance the antibody-dependent cell-mediated cytotoxicity (ADCC) of hu3F8 ( 15 ).

Publication Year: 2014