Citations in PubMed

Primary Citation PubMed: 22718982 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes.

(2012) Nucleic Acids Res 40

PubMed: 22718982 | PubMedCentral: PMC3439924 | DOI: 10.1093/nar/gks548

Data collection and refinement statistics for the crystal structures of RNase T–DNA complexes Product complex Substrate complex PDB code 3VA3 3VA0 3V9Z 3V9S 3V9X 3V9W 3V9U Stem-loop 2nt 3... 32;-overhang Dinucleotide GG 3′-end AAC 3′-end ACC 3′-end AAA 3′-end TTA 3′-end AAT RNase T used in crystallization E92G mutant Wild-type Wild-type Wild-type Wild-type E92G mutant E92G mutant DNA in crystals (visible in bold ) 5′- GG -3′ 5′-TTAC AAC -3′ 5′-TTAC ACC -3′ 5′-TTAT AAA -3′ 5′ - GC T TA -3′ 5′-TTAC AAT -3′ Metal ions in active site (per molecular) none 1 Mg 2+ 1 Mg 2+ 1 Mg 2+ 2 Mg 2+ 2 Mg 2+ 2 Mg 2+ Data collection Space group P2 1 2 1 2 P2 1 2 1 2 P2 1 2 1 2 P2 1 2 1 2 P3 2 P3 2 P3 2 Cell dimensions      a , b , c (Å) 100.27, 112.68, 57.79 95.69, 105.81, 47.07 96.06, 105.84, 46.92 96.42, 106.09, 46.95 46.28, 46.28, 314.38 46.34, 46.34, 315.35 46.25, 46.25, 313.65 Resolution (Å) 30.0–2.7 (2.8–2.7) 30.0–2.2 (2.27–2.20) 50.0–2.1 (2.18–2.10) 30.0–1.8 (1.83–1.80) 30.0–1.9 (1.97–1.90) 30.0–1.7 (1.76–1.70) 30.0–2.3 (2.38–2.30) R sym 0.102 (0.412) 0.074 (0.232) 0.11 (0.487) 0.091 (0.362) 0.060 (0.353) 0.054 (0.352) 0.071 (0.320) Average I /σ I 19.4 (2.24) 10.0 (2.5) 15.9 (3.5) 31.9 (8.6) 25.3 (4.0) 23.9 (3.0) 21.1 (3.9) Completeness (%) 94.3 (93.5) 97.0 (95.2) 99.4 (99.9) 96.4 (100.0) 98.9 (99.9) 97.3 (99.7) 99.7 (99.8) Redundancy 3.2 (2.6) 3.4 (3.0) 4.8 (4.7) 5.4 (5.8) 3.0 (3.1) 2.6 (2.7) 3.2 (3.2) Refinement Resolution (Å) 28.9-2.7 28.4-2.2 25.7-2.1 28.5-1.8 23.3-1.9 26.4-1.7 23.2-2.3 No.

Structural coordinates and diffraction structure factors have been deposited in the RCSB Protein Data Bank with the PDB ID codes of 3VA3, 3VA0, 3V9Z, 3V9S, 3V9X, 3V9W and 3V9U ( Table 1 ).

ACCESSION NUMBERS Protein Data Bank with the PDB ID codes of 3VA3, 3VAO, 3V9Z, 3V9S, 3V9X, 3V9W and 3V9U.

Publication Year: 2012


Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.

(2014) PLoS Biol 12

PubMed: 24594808 | PubMedCentral: PMC3942315 | DOI: 10.1371/journal.pbio.1001803

(B) The 3′ end of the Y-structured DNA did not shift up and fit well with the single-stranded DNA with a 3′-end AA (PDB ID code 3V9X).

Publication Year: 2014