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Primary Citation PubMed: 23190262 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

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Crystal structure and functional characterization of the human RBM25 PWI domain and its flanking basic region.

(2013) Biochem J 450

PubMed: 23190262 | PubMedCentral: PMC3553564 | DOI: 10.1042/BJ20121382

The atomic co-ordinates and structure factors for the PWI domain and its flanking basic region were deposited in the PDB under accession code 3V53.

Parameter Native SeMet Data collection  Space group C 222 1 C 222 1  Cell dimensions    a , b , c (Å) 81.58, 86.17, 197.17 81.34, 86.57, 199.85   α, β, γ (°) 90.00, 90.00, 90.00 90.00, 90.00, 90.00  Molecules per asymmetric unit 5 5 Peak  Wavelength (Å) 0.9194 0.9790  Resolution (Å) 50.00–2.80 (2.85–2.80) 50.00–3.00 (3.11–3.00)   R merge (%) 6.7 (57.8) 8.2 (78.4)   I /σ I 21.9 (1.9) 18.1 (1.9)  Completeness (%) 97.0 (84.7) 96.9 (92.4)  Redundancy 5.9 (4.0) 5.7 (4.6) Refinement  Resolution (Å) 49.30–2.90 (2.98–2.90)  Number of reflections 14732   R factor / R free (%) 26.4/29.8  Number of atoms of protein 4150  Average B -factors 81.65  Rmsd   Bond lengths (Å) 0.0066   Bond angles (°) 0.9728  Ramachandran plot (%)   Favoured (98%) regions 97.32% (509/523)   Allowed (>99.8%) regions 100% (523/523)  PDB code 3V53 FPAs (fluorescence polarization assays) FPAs were performed in buffer B (25 mM Tris/HCl, pH 8.0, 150 mM NaCl and 1 mM EDTA) at 298 K using a SpectraMax M5 Microplate Reader system to investigate the PWI domain–nucleic acid interactions.

Publication Year: 2013