Primary Citation PubMed: 22266819
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Inhibition of HIV-1 reverse transcriptase-catalyzed synthesis by intercalated DNA Benzo[a]Pyrene 7,8-Dihydrodiol-9,10-Epoxide adducts.
(2013) PLoS One 8
PubMed: 24069141 | PubMedCentral: PMC3778021 | DOI: 10.1371/journal.pone.0072131
The crystallographic structure of a T-P/HIV-1 RT complex is shown (PDB ID 3V4I).
Publication Year: 2013
Structures of HIV-1 RT-RNA/DNA ternary complexes with dATP and nevirapine reveal conformational flexibility of RNA/DNA: insights into requirements for RNase H cleavage.
(2014) Nucleic Acids Res 42
PubMed: 24880687 | PubMedCentral: PMC4081091 | DOI: 10.1093/nar/gku487
Atomic coordinates of an RT molecule in RT-DNA/DNA-AZTTP (PDB ID 3V4I) or RT-DNA/DNA-NVP (PDB ID 3V81) complexes ( 37 ) were used as starting models to locate the two copies of RT in RT-RNA/DNA-dATP o... RT-RNA/DNA-NVP complexes, respectively, by molecular replacement.
In contrast, the conformation of DNA/DNA (Figure 3D ) is less perturbed upon binding of NVP when previously reported structures of RT-DNA/DNA-NVP (PDB ID 3V81) and RT-DNA/DNA-AZTTP (PDB ID 3V4I) obtained in an analogous crystal form were compared ( 37 ).
The minor groove widths of two independent copies of DNA/DNA in RT-DNA/DNA-NVP (yellow and orange; PDB ID 3V81) and RT-DNA/DNA-AZTTP (blue and cyan; PDB ID 3V4I) structures by CURVES+ are plotted.
3V4I ( 37 )] to HIV-1 RT (gray surface) in the respective catalytic ternary complexes shows significant deviations in nucleic acid binding tracks away from the polymerase active site.
3V4I ( 37 )] were aligned by superimposing Cα atoms of RT.
Publication Year: 2014
Azvudine, a novel nucleoside reverse transcriptase inhibitor showed good drug combination features and better inhibition on drug-resistant strains than lamivudine in vitro.
(2014) PLoS One 9
PubMed: 25144636 | PubMedCentral: PMC4140803 | DOI: 10.1371/journal.pone.0105617
The complex structure of RT with Zidovudine-TP (AZTTP) (PDB 3V4I) was obtained from the Protein Data Bank and was prepared by removing solvent molecules and adding hydrogen using Discovery Studio 3.1 ... http://accelrys.com/products/discovery-studio/ ).
Recently, the complex structure of RT with AZT (PDB 3V4I) has been reported  and we used it as reference to predict the binding mode of the two compounds.
Common and unique features of viral RNA-dependent polymerases.
(2014) Cell Mol Life Sci 71
PubMed: 25080879 | PubMedCentral: PMC4207942 | DOI: 10.1007/s00018-014-1695-z
c Structure of the HIV-1 RT based on PDB accession 3V4I.
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