Citations in PubMed

Primary Citation PubMed: 23459413 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.

(2013) Front Mol Neurosci 6

PubMed: 23459413 | PubMedCentral: PMC3586699 | DOI: 10.3389/fnmol.2013.00002

mRuby 1 pH 4.5 (PDB 3U0L) mRuby 1 pH 8.5 (PDB 3U0M) mRuby 2 (PDB 3U0N) Ca 2 +-RCaMP (PDB 3U0K) Ca 2 +-RGECO1 (PDB 4I2Y) DATA COLLECTION Space group P2 1 2 1 2 1 P2 1 2 1 2 1 I222 P3 2 21 P2 1 Cell dim... nsions   a (Å) 31.77 31.71 67.27 75.92 65.16   b (Å) 67.44 67.08 82.52 75.92 91.73   c (Å) 95.06 95.00 88.91 123.16 68.57 β (degrees) 90 90 90 120 95.3 Beamline APS 31-ID APS 31-ID APS 31-ID APS 31-ID ALS 8.2.2 Wavelength (Å) 0.9793 0.9793 0.9793 0.9793 1.000 Resolution range (Å) a 19.43 − 1.25 28.66 − 1.65 27.90 − 1.60 34.82 − 2.10 54.77 − 2.20 Total reflections 595,508 256,831 277,856 404,612 151,067 Unique reflections 56,036 24,632 32,955 24,607 40,865 Completeness (%) 97.8 (95.8) 97.9 (96.9) 99.8 (100) 99.9 (100) 100 (100) I/σ a 16.5 (4.6) 19.7 (4.6) 11.7 (4.7) 20.0 (6.7) 8.8 (2.6) R sym (%) a , b 7.3 (56.2) 7.1 (58.4) 12.8 (51.3) 10.3 (54.5) 10.5 (58.8) REFINEMENT R work / R free (%) c 12.6/16.1 17.2/20.1 15.4/17.9 18.9/23.9 19.4/25.7 Resolution range (Å) 20 − 1.25 30 − 1.65 30 − 1.60 22 − 2.10 54 − 2.20 Number of atoms (B factor)   protein 1957 (14.4) 1823 (19.7) 1854 (12.5) 3160 (15.6) 6092 (30.9)   water 231 (28.7) 146 (28.9) 195 (26.2) 133 (33.4) 99 (27.0)   other 4 (20.3) – 10 (31.1) 8 (41.0) 8 (27.6) RMSD values   Bond lengths (Å) 0.028 0.024 0.031 0.022 0.021   Bond angles (degrees) 2.48 2.24 2.63 1.90 1.91 Ramachandran (%)   Favored/disallowed 98.6/0 98.6/0 99.1/0 96.7/0.8 97.9/0.4 Molprobity   Clashscore (percentile) 14.73 (17) 7.37 (85) 9.57 (67) 10.4 (84) 13.21 (79)   Molprobity score (percentile) 1.67 (60) 1.57 (87) 1.53 (87) 2.08 (75) 2.31 (66) a The number in parentheses is for the highest resolution shell .

Publication Year: 2013