Primary Citation PubMed: 2001356
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Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases.
(2009) PLoS Comput Biol 5
PubMed: 19696882 | PubMedCentral: PMC2719061 | DOI: 10.1371/journal.pcbi.1000476
C) Human thioredoxin (TRX) (PDB ID: 3TRX).
Publication Year: 2009
Diversity of chemical mechanisms in thioredoxin catalysis revealed by single-molecule force spectroscopy.
(2009) Nat Struct Mol Biol 16
PubMed: 19597482 | PubMedCentral: PMC2745927 | DOI: 10.1038/nsmb.1627
Figure 5 Structural analysis and molecular dynamics simulations of the binding groove in thioredoxin enzymes (A) Geometric dissection of the hydrophobic binding groove, shaded in green and outlined in... red for human Trx1 (pdb: 3trx).
Structural insights into interaction between mammalian methionine sulfoxide reductase B1 and thioredoxin.
(2012) J Biomed Biotechnol 2012
PubMed: 22505815 | PubMedCentral: PMC3312296 | DOI: 10.1155/2012/586539
The initial sets of atomic coordinates of the proteins (reduced forms) were taken from PDB (2kv1 and 3trx for MsrB1 and Trx, resp.)
Structural Modelling of Oxidized MsrB1 and Reduced Trx The average structures of oxidized MsrB1 and reduced Trx were obtained from the molecular dynamics simulations starting from coordinates of the reduced proteins taken from PDB (2kv1 and 3trx for MsrB1 and Trx, resp.)
Publication Year: 2012
Access of hydrogen-radicals to the peptide-backbone as a measure for estimating the flexibility of proteins using matrix-assisted laser desorption/ionization mass spectrometry.
(2014) Int J Mol Sci 15
PubMed: 24828203 | PubMedCentral: PMC4057740 | DOI: 10.3390/ijms15058428
It should be noted here that the secondary structures determined by X-ray and NMR of proteins (myoglobin (PDB: 2FRF (X-ray), 1MYF (NMR)), cytochrome c (PDB: 1HRC (X-ray), 1AKK (NMR)) and thioredoxin (... DB: 1AUC (X-ray), 3TRX (NMR))) are similar to each other.
Publication Year: 2014
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