Citations in PubMed

Primary Citation PubMed: 22451932 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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CD4 binding determinant mimicry for HIV vaccine design.

(2012) Front Immunol 3

PubMed: 23251137 | PubMedCentral: PMC3523313 | DOI: 10.3389/fimmu.2012.00383

(A) Superimposed CD4BD core conformations in gp120 variants (residues 421–433) complexed with soluble CD4 and antibody 17b (cyan; 1GC1) and gp120 (extended core) without a ligand (purple; 3TGQ... 3TGR, 3TGT, 3TIH).

, CD4 liganded 1GC1, 1G9M, 1G9N, 1RZJ, 1RZK, 3JWD, 3JWO, 2NXY, 2NXZ, 2NY5, 2B4C, 2QAD; unliganded 2BF1, 3TGQ, 3TGR, 3TGT, 3TIH; CD4BD OD antibody liganded 3NGB, 3SE8, 3SE9, 3U7Y, 2NY7, 3HI1, 3IDX; low-molecular-weight CD4 mimetic liganded 1YYL, 1YYM, 2I5Y, 2I60, 3TGS).

Publication Year: 2012

Epitope specificity of human immunodeficiency virus-1 antibody dependent cellular cytotoxicity [ADCC] responses.

(2013) Curr HIV Res 11

PubMed: 24191939 | PubMedCentral: PMC3878369 | DOI: null

X-ray coordinates of (A) the unliganded gp12093TH057 coree (PDB:3TGT) and (B) the gp120HXBc2core/s CD4 subset of gp120HXBc2core/CD4/17b complex (PDB:1GC1) were fitted into tomograms using Chimera [85]...

Publication Year: 2013

Crystal structures of HIV-1 gp120 envelope glycoprotein in complex with NBD analogues that target the CD4-binding site.

(2014) PLoS One 9

PubMed: 24489681 | PubMedCentral: PMC3904841 | DOI: 10.1371/journal.pone.0085940

The structure of YU2core-NBD-557-48d complex was solved by molecular replacement using gp120 structure in complex with CD4 and 17b (PDB ID: 1RZK) as a search model, and structures of other small molec... le bound-clade A/E gp120 93TH057 H375S complexes were solved by molecular replacement using AutoMR in PHENIX software suite [37] with unliganded clade A/E gp120 core e (PDB ID: 3TGT) as a search model.

Publication Year: 2014

Tertiary structure-based prediction of conformational B-cell epitopes through B factors.

(2014) Bioinformatics 30

PubMed: 24931993 | PubMedCentral: PMC4058920 | DOI: 10.1093/bioinformatics/btu281

4.1 Antigen GP120 of HIV-1 clade A/E 93TH057 The tertiary structure data of the antigen GP120 of HIV-1 clade A/E 93TH057 is stored at PDB entry 3TGT.

Publication Year: 2014

NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences.

(2014) Nucleic Acids Res 42

PubMed: 24782517 | PubMedCentral: PMC4086065 | DOI: 10.1093/nar/gku318

Based on VRC01 neutralization data and sequence alignment of 181 HIV-1 strains ( 7 ), and using an unbound gp120-core antigen structure as input [PDB:3TGT ( 27 )], all top nine residues predicted by N... P (residues 279–280, 456–461, 466; Figure 2 ) were part of the VRC01 epitope as defined by the gp120/VRC01 complex structure [PDB:3NGB, ( 28 )] (with at least one antigen heavy atom within 5 Å of any antibody heavy atom).

( a ) Predictions from the NEP server, with the top nine residues highlighted in yellow on a structure of the antigen (an unliganded HIV-1 gp120 core, PDB:3TGT).

Publication Year: 2014