Primary Citation PubMed: 21835983
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CD4 binding determinant mimicry for HIV vaccine design.
(2012) Front Immunol 3
PubMed: 23251137 | PubMedCentral: PMC3523313 | DOI: 10.3389/fimmu.2012.00383
, CD4 liganded 1GC1, 1G9M, 1G9N, 1RZJ, 1RZK, 3JWD, 3JWO, 2NXY, 2NXZ, 2NY5, 2B4C, 2QAD; unliganded 2BF1, 3TGQ, 3TGR, 3TGT, 3TIH; CD4BD OD antibody liganded 3NGB, 3SE8, 3SE9, 3U7Y, 2NY7, 3HI1, 3IDX; low... molecular-weight CD4 mimetic liganded 1YYL, 1YYM, 2I5Y, 2I60, 3TGS).
Publication Year: 2012
The N276 glycosylation site is required for HIV-1 neutralization by the CD4 binding site specific HJ16 monoclonal antibody.
(2013) PLoS One 8
PubMed: 23874792 | PubMedCentral: PMC3714269 | DOI: 10.1371/journal.pone.0068863
In blue are shown the footprints of CD4 (pdb accession n° 1gc1) and the CD4bs-specific antibodies PGV04 (pdb n°: 3se9), b12 (pdb n°: 3dnl), and VRC01 (pdb n°: 3ngb).
Structural Analyses The crystal structure coordinates of the different gp120 molecules interacting with sCD4 (pdb 1gc1) or the human CD4bs-specific antibodies PGV04 (pdb 3se9), b12 (pdb 3dnl) and VRC01 (pdb 3ngb) were used to identify the footprint of interaction of each ligand on gp120 within an interaction distance of 5 A°.
Publication Year: 2013
A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies.
(2013) PLoS Pathog 9
PubMed: 24068931 | PubMedCentral: PMC3777863 | DOI: 10.1371/journal.ppat.1003618
The crystal structure of gp120 in complex with PGV04 (PDB:3SE9;  ) was fitted into the EM density.
Tertiary structure-based prediction of conformational B-cell epitopes through B factors.
(2014) Bioinformatics 30
PubMed: 24931993 | PubMedCentral: PMC4058920 | DOI: 10.1093/bioinformatics/btu281
There are six complexes (3SE8, 3SE9, 4LSP, 4LSU, 3NGB and 4JB9) containing this antigen or a mutated one in PDB.
Publication Year: 2014
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