Citations in PubMed

Primary Citation PubMed: 21835983 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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CD4 binding determinant mimicry for HIV vaccine design.

(2012) Front Immunol 3

PubMed: 23251137 | PubMedCentral: PMC3523313 | DOI: 10.3389/fimmu.2012.00383

, CD4 liganded 1GC1, 1G9M, 1G9N, 1RZJ, 1RZK, 3JWD, 3JWO, 2NXY, 2NXZ, 2NY5, 2B4C, 2QAD; unliganded 2BF1, 3TGQ, 3TGR, 3TGT, 3TIH; CD4BD OD antibody liganded 3NGB, 3SE8, 3SE9, 3U7Y, 2NY7, 3HI1, 3IDX; low... molecular-weight CD4 mimetic liganded 1YYL, 1YYM, 2I5Y, 2I60, 3TGS).

Publication Year: 2012

The N276 glycosylation site is required for HIV-1 neutralization by the CD4 binding site specific HJ16 monoclonal antibody.

(2013) PLoS One 8

PubMed: 23874792 | PubMedCentral: PMC3714269 | DOI: 10.1371/journal.pone.0068863

In blue are shown the footprints of CD4 (pdb accession n° 1gc1) and the CD4bs-specific antibodies PGV04 (pdb n°: 3se9), b12 (pdb n°: 3dnl), and VRC01 (pdb n°: 3ngb).

Structural Analyses The crystal structure coordinates of the different gp120 molecules interacting with sCD4 (pdb 1gc1) or the human CD4bs-specific antibodies PGV04 (pdb 3se9), b12 (pdb 3dnl) and VRC01 (pdb 3ngb) were used to identify the footprint of interaction of each ligand on gp120 within an interaction distance of 5 A°.

Publication Year: 2013

A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies.

(2013) PLoS Pathog 9

PubMed: 24068931 | PubMedCentral: PMC3777863 | DOI: 10.1371/journal.ppat.1003618

The crystal structure of gp120 in complex with PGV04 (PDB:3SE9; [85] ) was fitted into the EM density.

Publication Year: 2013

Tertiary structure-based prediction of conformational B-cell epitopes through B factors.

(2014) Bioinformatics 30

PubMed: 24931993 | PubMedCentral: PMC4058920 | DOI: 10.1093/bioinformatics/btu281

There are six complexes (3SE8, 3SE9, 4LSP, 4LSU, 3NGB and 4JB9) containing this antigen or a mutated one in PDB.

Publication Year: 2014