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Novel RNA base pair with higher specificity using single selenium atom.

(2012) Nucleic Acids Res 40

PubMed: 22323523 | PubMedCentral: PMC3367167 | DOI: 10.1093/nar/gks010

Data collection and refinement statistics of Se U-RNA Structure (PDB ID) GUAUA- Se U-AC (3S49) Data collection     Space group R32     C... ll dimensions: a , b , c (Å), α, β, γ (°C) 47.095, 47.095, 424.655, 90, 90, 120 90, 90, 120     Resolution range (Å) (last shell) 50.0–2.28 (2.37–2.28)     Unique reflections 9870 (959)     Completeness (%) 99.8 (99.4)      R merge (%) 7.7 (23.5)      I /σ( I ) 21.0 (3.9)     Redundancy 18.8 (10.7) Refinement     Resolution range (Å) 30.0–2.3      R work (%) 21.4      R free (%) 26.9     Number of reflections 8206     Number of atoms     Nucleic acid (double) 1162     Heavy atoms and ion 7 Se     Water 71     RMS deviations     Bond length (Å) 0.007     Bond angle 1.169 RESULTS AND DISCUSSION Synthesis of 2-Se-uridine phosphoramidite Though selenium was incorporated into uridine four decades ago ( 27 , 28 ), RNA containing 2-Se-uridine ( Se U) has not been synthesized because of the synthetic challenge.

( B ) The superimpose comparison of one Se U-RNA duplex (red; PDB ID: 3S49) with its native counterpart [5′-r(GUAUAUA)-dC-3′] 2 (cyan; PDB ID: 246D) with a RMSD value 0.55.

Publication Year: 2012