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Novel RNA base pair with higher specificity using single selenium atom.
(2012) Nucleic Acids Res 40
PubMed: 22323523 | PubMedCentral: PMC3367167 | DOI: 10.1093/nar/gks010
Data collection and refinement statistics of Se U-RNA Structure (PDB ID) GUAUA- Se U-AC (3S49) Data collection Space group R32 C... ll dimensions: a , b , c (Å), α, β, γ (°C) 47.095, 47.095, 424.655, 90, 90, 120 90, 90, 120 Resolution range (Å) (last shell) 50.0–2.28 (2.37–2.28) Unique reflections 9870 (959) Completeness (%) 99.8 (99.4) R merge (%) 7.7 (23.5) I /σ( I ) 21.0 (3.9) Redundancy 18.8 (10.7) Refinement Resolution range (Å) 30.0–2.3 R work (%) 21.4 R free (%) 26.9 Number of reflections 8206 Number of atoms Nucleic acid (double) 1162 Heavy atoms and ion 7 Se Water 71 RMS deviations Bond length (Å) 0.007 Bond angle 1.169 RESULTS AND DISCUSSION Synthesis of 2-Se-uridine phosphoramidite Though selenium was incorporated into uridine four decades ago ( 27 , 28 ), RNA containing 2-Se-uridine ( Se U) has not been synthesized because of the synthetic challenge.
( B ) The superimpose comparison of one Se U-RNA duplex (red; PDB ID: 3S49) with its native counterpart [5′-r(GUAUAUA)-dC-3′] 2 (cyan; PDB ID: 246D) with a RMSD value 0.55.
Publication Year: 2012
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