Citations in PubMed

Primary Citation PubMed: 27050128 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Functional determinants of gate-DNA selection and cleavage by bacterial type II topoisomerases.

(2013) Nucleic Acids Res 41

PubMed: 23939623 | PubMedCentral: PMC3814380 | DOI: 10.1093/nar/gkt696

Images were generated with First Glance in JMol based on protein data bank entry 3RAE.

Publication Year: 2013

Structure of an 'open' clamp type II topoisomerase-DNA complex provides a mechanism for DNA capture and transport.

(2013) Nucleic Acids Res 41

PubMed: 23965305 | PubMedCentral: PMC3834822 | DOI: 10.1093/nar/gkt749

Structure determination Structures were solved by molecular replacement in Phaser ( 35 , 37 ) using as search models our ParC55/ParE30/18mer DNA+levofloxacin structure (PDB ID: 3RAE) as a starting mod... l and a ParE ATP domain homology modelled in 3D-JigSaw ( 38 ) on the basis of the structure of the ATPase domain of the E. coli gyrase (PDB ID: 1EI1) ( 39 ).

Subsequent refinement was executed in Phenix ( 42 ) using the secondary structure restraints derived from the high-resolution structure of ParC55/ParE30/18mer+levofloxacin (PDB ID: 3RAE).

Publication Year: 2013

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4427296

Furthermore, the available crystal structures of quinolones complexed with DNA Gyrase from S. aureus (PDB: 2XCT) and topo IV (PDB: 3K9F, 3RAD, 3RAE & 2XKK) were also examined for the hydrogen ... onded interaction pattern between Ser and quinolones.

Publication Year: 2015