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Pathway-based screening strategy for multitarget inhibitors of diverse proteins in metabolic pathways.
(2013) PLoS Comput Biol 9
PubMed: 23861662 | PubMedCentral: PMC3701698 | DOI: 10.1371/journal.pcbi.1003127
For defining binding sites, the apo-form structures of SDH (3PHG) and SK (1ZUH  ) were aligned to their respective closed-form structures SDH (3PHI) and SK (1ZUI  ), using a structural alignme... t tool  .
The ligands are shikimate (one of the substrates) and NADPH (cofactor) (3PHI).
The ligands include shikimate and NADPH of SDH (PDB code 3PHI), and shikimate and ACP (ATP analog) of SK (PDB code 1ZUH  , a shikimate kinase structure of Mycobacterium tuberculosis ).
Publication Year: 2013
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