Primary Citation PubMed: 21095591
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Crystal structures of RNase H2 in complex with nucleic acid reveal the mechanism of RNA-DNA junction recognition and cleavage.
(2010) Mol Cell 40
PubMed: 21095591 | PubMedCentral: PMC3025331 | DOI: 10.1016/j.molcel.2010.11.001
Cell 22 2006 5 13 16600865 Accession Numbers The 1R-Mg, 1R-Mn, and WT-1R-Ca structures have been deposited in the Protein Data Bank under accession codes 3O3F, 3O3H, and 3O3G, respectively.
Publication Year: 2010
The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects.
(2011) J Biol Chem 286
PubMed: 21177858 | PubMedCentral: PMC3060507 | DOI: 10.1074/jbc.M110.181974
The positions of metal ions ( gray spheres ) and the substrate ( gray with single ribonucleotide in pink ) are inferred from the superposition of Tm-RNase H2-substrate complex (Protein Data Bank ID 3O... G ) onto human RNase H2.
Publication Year: 2011
RNase H2 roles in genome integrity revealed by unlinking its activities.
(2013) Nucleic Acids Res 41
PubMed: 23355612 | PubMedCentral: PMC3597693 | DOI: 10.1093/nar/gkt027
To determine the reason for the different specificity between RNase H2 and RNase H3, we examined which residues of RNase H3 are involved in catalysis by superimposing the structure of Bst-RNase H3 (PD... : 2D0B) and the structure of Tm-RNase H2 in complex with a substrate containing a RpD junction (PDB: 3O3G) ( Figure 2 A and C).
MATERIALS AND METHODS Modeling the structure of Bst-RNase H3 in complex with substrates To model a structure of Bst-RNase H3 in complex with a substrate, we used the crystal structures of Bst-RNase H3 (PDB: 2D0B), human RNase H1 in complex with RNA/DNA hybrid (PDB: 3PUF) and Tm-RNase H2 in complex with duplex DNA containing single ribonucleotide (PDB: 3O3G).
Publication Year: 2013
Crystal structure of RNase H3-substrate complex reveals parallel evolution of RNA/DNA hybrid recognition.
(2014) Nucleic Acids Res 42
PubMed: 25016521 | PubMedCentral: PMC4132731 | DOI: 10.1093/nar/gku615
Magnesium ions from Tm-RNase H2 structure (PDB ID: 3O3G) are shown as magenta spheres.
The positions of metal ions A and B from superimposed Tm-RNase H2 structure (PDB ID: 3O3G ( 14 )) are shown as gray spheres.
(a) Model of the full-length RNase H1 (PDB IDs: 2QK9 (catalytic domain) ( 8 ) and 3BSU (HBD) ( 11 )), (b) RNase H2 (PDB ID: 3O3G ( 14 )) and (c) Ta-RNase H3.
Publication Year: 2014
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