Primary Citation PubMed: 19332554
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Structural biology of DNA repair: spatial organisation of the multicomponent complexes of nonhomologous end joining.
(2010) J Nucleic Acids 2010
PubMed: 20862368 | PubMedCentral: PMC2938450 | DOI: 10.4061/2010/621695
The simulated scattering profile using the crystallographic structure of BmX4 (PDB code: 3II6) fitted the measured SAXS curve well ( χ 2 = 3.687, data not shown).
(b) XRCC(residues 1–203)(blue) and BRCT domains of LigIV(residues 654–911)(violet) (PDB code: 3II6) (c) Lif1p(residues 1–246)(blue) and BRCT domains of Lig4p(residues 680–944)(violet).
The crystallographic model of BmX4 (PDB code: 3II6) was superimposed into its molecular envelope by using Chimera.
Publication Year: 2010
XRCC4 protein interactions with XRCC4-like factor (XLF) create an extended grooved scaffold for DNA ligation and double strand break repair.
(2011) J Biol Chem 286
PubMed: 21775435 | PubMedCentral: PMC3173232 | DOI: 10.1074/jbc.M111.272641
The XRCC4-BRCT structure (PDB code 3ii6 , cyan ) ( 35 , 36 ) was superimposed with XRCC4.
Publication Year: 2011
Yeast two-hybrid junk sequences contain selected linear motifs.
(2011) Nucleic Acids Res 39
PubMed: 21785140 | PubMedCentral: PMC3201885 | DOI: 10.1093/nar/gkr600
( A ) LIG4 BRCT tandem domains (PDB 3ii6) with the linker region in magenta.
( B ) LIG4 BRCT tandem domains (PDB 3ii6) bound to coiled coil of XRCC4 (in cyan).
Interestingly, there is an X-ray crystal structure of the LIG4 tandem BRCT domains in complex with XRCC4 (PDB 3ii6) ( 24 ) in which LIG4 and XRCC4 binding is mediated by a lysine-rich region.
A human XRCC4-XLF complex bridges DNA.
(2012) Nucleic Acids Res 40
PubMed: 22287571 | PubMedCentral: PMC3287209 | DOI: 10.1093/nar/gks022
Structural states of XRCC4 are indicated with their associated function (PDB 1FU1 and PDB 3II6; 21,23,37,38).
Publication Year: 2012
Structural insights into the role of domain flexibility in human DNA ligase IV.
(2012) Structure 20
PubMed: 22658747 | PubMedCentral: PMC3391681 | DOI: 10.1016/j.str.2012.04.012
The structure of a LX4 construct (PDB code: 3II6 ; Wu et al., 2009 ).
Subsequent rigid-body modeling of LX4 ΔCTD;CtoA was performed using BUNCH ( Petoukhov and Svergun, 2005 ), after which we used the crystallographic structure of the complex of the BRCT domains of LigIV and XRCC4 (PDB code: 3II6 ; Wu et al., 2009 ), and homology models of DBD, NTase, and OBD (see above).
The spatial organization of non-homologous end joining: from bridging to end joining.
(2014) DNA Repair (Amst) 17
PubMed: 24636752 | PubMedCentral: PMC4037875 | DOI: 10.1016/j.dnarep.2014.02.010
(A) Crystal structure of the LigIV/Artemis complex (PDB code: 3W1B;  ) shown together with that of the LigIV/XRCC4 complex (PDB code: 3II6;  ).
Publication Year: 2014
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