Citations in PubMed

Primary Citation PubMed: 19332554 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural biology of DNA repair: spatial organisation of the multicomponent complexes of nonhomologous end joining.

(2010) J Nucleic Acids 2010

PubMed: 20862368 | PubMedCentral: PMC2938450 | DOI: 10.4061/2010/621695

The simulated scattering profile using the crystallographic structure of BmX4 (PDB code: 3II6) fitted the measured SAXS curve well ( χ 2 = 3.687, data not shown).

(b) XRCC(residues 1–203)(blue) and BRCT domains of LigIV(residues 654–911)(violet) (PDB code: 3II6) (c) Lif1p(residues 1–246)(blue) and BRCT domains of Lig4p(residues 680–944)(violet).

The crystallographic model of BmX4 (PDB code: 3II6) was superimposed into its molecular envelope by using Chimera.

Publication Year: 2010

XRCC4 protein interactions with XRCC4-like factor (XLF) create an extended grooved scaffold for DNA ligation and double strand break repair.

(2011) J Biol Chem 286

PubMed: 21775435 | PubMedCentral: PMC3173232 | DOI: 10.1074/jbc.M111.272641

The XRCC4-BRCT structure (PDB code 3ii6 , cyan ) ( 35 , 36 ) was superimposed with XRCC4.

Publication Year: 2011

Yeast two-hybrid junk sequences contain selected linear motifs.

(2011) Nucleic Acids Res 39

PubMed: 21785140 | PubMedCentral: PMC3201885 | DOI: 10.1093/nar/gkr600

( A ) LIG4 BRCT tandem domains (PDB 3ii6) with the linker region in magenta.

( B ) LIG4 BRCT tandem domains (PDB 3ii6) bound to coiled coil of XRCC4 (in cyan).

Interestingly, there is an X-ray crystal structure of the LIG4 tandem BRCT domains in complex with XRCC4 (PDB 3ii6) ( 24 ) in which LIG4 and XRCC4 binding is mediated by a lysine-rich region.

Publication Year: 2011

A human XRCC4-XLF complex bridges DNA.

(2012) Nucleic Acids Res 40

PubMed: 22287571 | PubMedCentral: PMC3287209 | DOI: 10.1093/nar/gks022

Structural states of XRCC4 are indicated with their associated function (PDB 1FU1 and PDB 3II6; 21,23,37,38).

Publication Year: 2012

Structural insights into the role of domain flexibility in human DNA ligase IV.

(2012) Structure 20

PubMed: 22658747 | PubMedCentral: PMC3391681 | DOI: 10.1016/j.str.2012.04.012

The structure of a LX4 construct (PDB code: 3II6 ; Wu et al., 2009 ).

Subsequent rigid-body modeling of LX4 ΔCTD;CtoA was performed using BUNCH ( Petoukhov and Svergun, 2005 ), after which we used the crystallographic structure of the complex of the BRCT domains of LigIV and XRCC4 (PDB code: 3II6 ; Wu et al., 2009 ), and homology models of DBD, NTase, and OBD (see above).

Publication Year: 2012

The spatial organization of non-homologous end joining: from bridging to end joining.

(2014) DNA Repair (Amst) 17

PubMed: 24636752 | PubMedCentral: PMC4037875 | DOI: 10.1016/j.dnarep.2014.02.010

(A) Crystal structure of the LigIV/Artemis complex (PDB code: 3W1B; [82] ) shown together with that of the LigIV/XRCC4 complex (PDB code: 3II6; [49] ).

Publication Year: 2014