Primary Citation PubMed: 19965434
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Crystal structure of the neutralizing Llama V(HH) D7 and its mode of HIV-1 gp120 interaction.
(2010) PLoS One 5
PubMed: 20463957 | PubMedCentral: PMC2864739 | DOI: 10.1371/journal.pone.0010482
The Cα atoms of the heavy chain variable domains (b12 pdb code 2NY7; F105 pdb code 3HI1; b13 pdb code 3IDX; m18 pdb code 2AJ3) were superimposed and the CDR H2 and H3 are represented in the sa... e orientation.
Publication Year: 2010
CD4 binding determinant mimicry for HIV vaccine design.
(2012) Front Immunol 3
PubMed: 23251137 | PubMedCentral: PMC3523313 | DOI: 10.3389/fimmu.2012.00383
, CD4 liganded 1GC1, 1G9M, 1G9N, 1RZJ, 1RZK, 3JWD, 3JWO, 2NXY, 2NXZ, 2NY5, 2B4C, 2QAD; unliganded 2BF1, 3TGQ, 3TGR, 3TGT, 3TIH; CD4BD OD antibody liganded 3NGB, 3SE8, 3SE9, 3U7Y, 2NY7, 3HI1, 3IDX; low... molecular-weight CD4 mimetic liganded 1YYL, 1YYM, 2I5Y, 2I60, 3TGS).
Publication Year: 2012
HIV-1 receptor binding site-directed antibodies using a VH1-2 gene segment orthologue are activated by Env trimer immunization.
(2014) PLoS Pathog 10
PubMed: 25166308 | PubMedCentral: PMC4148451 | DOI: 10.1371/journal.ppat.1004337
Modeling of NHP antibody structure in complex with gp120 core The ClusPro server 2.0  –  was used in the antibody mode  to produce structural models of the NHP antibody GE356 in co... plex with the previously determined crystal structure of the gp120 core in complex with the human antibodies b13 (PDB ID: 3IDX) and F105 (PDB ID: 3HI1).
The GE356 footprint (blue surface) was obtained by modeling GE356 binding to the b13-bound gp120 crystal structure (PDB ID: 3IDX) with ClusPro 2.0.
Publication Year: 2014
Inhibition of plasma kallikrein by a highly specific active site blocking antibody.
(2014) J Biol Chem 289
PubMed: 24970892 | PubMedCentral: PMC4156074 | DOI: 10.1074/jbc.M114.569061
The complex structure was solved by molecular replacement in Phaser using separate constant and variable domains of a Fab model (derived from PDB 3IDX ) and the pKal catalytic domain structure PDB 2AN... ( 35 ).
PubMed ID is not available.
Published in 2015
The majority of the gp120 structures, including the unbound core structures, belong to this group), (ii) the mAb b12-bound (PDB ID 2NY7), (iii) the mAb F105-bound (PDB ID 3HI1), and (iv) the mAb b13-b... und conformations (PDB ID 3IDX).
Publication Year: 2015
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