Citations in PubMed

Primary Citation PubMed: 19866488 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural and functional analysis of the repressor complex in the Notch signaling pathway of Drosophila melanogaster.

(2011) Mol Biol Cell 22

PubMed: 21737682 | PubMedCentral: PMC3164469 | DOI: 10.1091/mbc.E11-05-0420

(A) Left, ribbon diagram of mouse CSL-DNA (Protein Data Bank [PDB] ID: 3IAG) structure, showing overall fold ( Friedmann and Kovall, 2010 ).

Publication Year: 2011


Protein detection by nanopores equipped with aptamers.

(2012) J Am Chem Soc 134

PubMed: 22229655 | PubMedCentral: PMC3278221 | DOI: 10.1021/ja2105653

The models are based on pdb files 7AHL (αHL, gray), 3IAG (dsDNA, light blue and orange), and 148D (thrombin aptamer, red).

The models are based on pdb files 7AHL (αHL, gray), 3IAG (dsDNA, light blue and orange), 148D (thrombin aptamer, red), and 1HUT (thrombin and thrombin·aptamer complex, green and green plus red, respectively).

The model was made with PyMOL software ( www.pymol.org ) based on the pdb files 7AHL (αHL, gray) and 3IAG (ssDNA, light blue).

The models are based on pdb files 7AHL (αHL, gray), 3IAG (dsDNA, light blue and orange), and 148D (thrombin aptamer, red).

Publication Year: 2012


A combination of computational and experimental approaches identifies DNA sequence constraints associated with target site binding specificity of the transcription factor CSL.

(2014) Nucleic Acids Res 42

PubMed: 25114055 | PubMedCentral: PMC4176381 | DOI: 10.1093/nar/gku730

Indeed, the single X-ray structure where CSL is bound to a DNA motif with cytosine in position 1 (PDB ID 3IAG, -CGTGTGAA-, (44)) shows such a bidentate interaction between the glutamine and guanine, c... nfirming that this contact occurs.

Firstly, using the structure of mouse CSL bound to a slightly different DNA sequence CGTGTGAA (PDB ID: 3IAG) ( 44 ), we found a similar preference for cytosine in position 1 (Supplementary Table S5).

Publication Year: 2014