Citations in PubMed

Primary Citation PubMed: 19690367 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural analysis of a novel class of R-M controller proteins: C.Csp231I from Citrobacter sp. RFL231.

(2011) J Mol Biol 409

PubMed: 21440553 | PubMedCentral: PMC3115060 | DOI: 10.1016/j.jmb.2011.03.033

34 Each structure was solved by molecular replacement with Phaser 35 using a monomer of the C-protein C.Esp1396I as search model (Protein Data Bank ID: 3G5G 22 ).

Publication Year: 2011


Structural analysis of DNA-protein complexes regulating the restriction-modification system Esp1396I.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69

PubMed: 23989141 | PubMedCentral: PMC3758141 | DOI: 10.1107/S174430911302126X

The data were processed using either MOSFLM (Leslie, 1992 ▶ ) and AIMLESS (Winn et al. , 2011 ▶ ; Evans, 2006 ▶ , 2011 ▶ ) or XDS and XSCALE (Kabsch, 2010 ▶ ) a... d a molecular-replacement solution was found by Phaser (McCoy et al. , 2007 ▶ ) using the native free protein structure as a search model (Ball et al. , 2009 ▶ ; PDB entry 3g5g ).

The 19O R structure   The overall fold of C. Esp 1396I in the 19O R structure closely matches that of the free protein structure (PDB entry 3g5g ; Ball et al. , 2009 ▶ ), with an overall r.m.s.d. of 0.65 Å over all observable main-chain atoms.

Publication Year: 2013


Structural and mutagenic analysis of the RM controller protein C.Esp1396I.

(2014) PLoS One 9

PubMed: 24887147 | PubMedCentral: PMC4041747 | DOI: 10.1371/journal.pone.0098365

The root mean square deviations (RMSD) between the main chain atoms of each of the structures presented here and the previous structure (3G5G) were <1 Å in all cases.

The native protein The high-resolution (1.4 Å) triclinic wild type structure presented here differs significantly in crystal contacts when compared to the previously described wild type structure 3G5G [19] .

Diffraction data were processed using XDS and XSCALE [23] or MOSFLM [24] and Aimless [25] , [26] and phases were obtained in all cases by molecular replacement with Phaser [27] , [28] using the wild type monomer (3G5G) as a search model in each case (with the addition of the DNA duplex from 3UFD for the Y37F-19O M structure).

The two alternative C.Esp1396I loop positions in 3G5G are shown in light blue (conformation I) and light green (conformation II) and the high resolution wild type loop position from 4I6R is shown in orange (III).

Publication Year: 2014