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Structure of gentlyase, the neutral metalloprotease of Paenibacillus polymyxa.
(2013) Acta Crystallogr D Biol Crystallogr 69
PubMed: 23275160 | PubMedCentral: PMC3532130 | DOI: 10.1107/S0907444912041169
The backbone r.m.s.d. to the best resolved thermolysin structure (PDB entry 3fvp ) is 0.59/0.61 Å over 302 residues and the backbone r.m.s.d. to B. cereus TLP (PDB entry 1npc ; Stark e... al. , 1992 ▶ ) is 0.94/1.01 Å, which is similar to the r.m.s.d. of 0.99 Å over 316 residues between thermolysin and B. cereus TLP and would be expected from the high sequence similarity.
( b ) Superposition of the overall structure of P. polymyxa neutral protease (N-terminal domain in cyan and C-terminal domain in blue) with that of thermolysin from B. thermoproteolyticus (green; PDB entry 3fvp ).
The structure was solved by molecular replacement with Phaser (McCoy et al. , 2007 ▶ ) using thermolysin (PDB entry 3fvp ; L. Englert, A. Biela, M. Zayed, D. Hangauer, A. Heine & G. Klebe, unpublished work) as a search model.
( b ) Ca1–2 in the prototypic neutral protease thermolysin from B. thermoproteolyticus (PDB entry 3fvp ).
( b ) The Ca3 site in the prototypic neutral protease thermolysin from B. thermoproteolyticus (PDB entry 3fvp ).
Publication Year: 2013
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