Primary Citation PubMed: 18676450
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Crystal engineering of HIV-1 reverse transcriptase for structure-based drug design.
(2008) Nucleic Acids Res 36
PubMed: 18676450 | PubMedCentral: PMC2528191 | DOI: 10.1093/nar/gkn464
The atomic coordinates and structure factors are deposited in Protein Data Bank (PDB) with accession code 3DLK.
Diffraction data and refinement statistics Unliganded RT69A PDB ID 3DLK X-ray source CHESS F1 Wavelength (Å) 0.9176 Space group C2 Cell constants ( a, b, c in Å; β in degrees) 164.01, 72.04, 109.33; 104.38 Resolution range (Å) (last shell) 50–1.85 (1.88–1.85) Number of unique reflections (number of observations) 99 493 (257 025) Completeness (%) (in last shell) 94.5 (84.8) R -merge (in last shell) 0.074 (0.588) Average I /σ( I ) (in last shell) 14.4 (1.9) Sigma cut-off | I | < −0.5σ( I ) Refinement statistics Total number of atoms (solvent atoms) 8051 (188) Resolution (Å) 40.0–1.85 Number of reflections ( R free set) 99 441 (2991) Completeness (%) (minus R free set) 94.3 (91.4) Cutoff criteria | F | < 0 R work 0.238 R free 0.252 Root mean square deviations Bond lengths (Å) 0.006 Bond angles (degrees) 1.313 An 1.85 Å structure of apo-RT Crystal structure of apo-RT69A is refined at 1.85 Å resolution to an R work and R free of 0.238 and 0.252, respectively.
Publication Year: 2008
Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation.
(2014) Nucleic Acids Res 42
PubMed: 24574528 | PubMedCentral: PMC4005681 | DOI: 10.1093/nar/gku143
( C ) Ribbon diagram overlay corresponding to the p51ΔPL monomer crystal structure (orange) and the p51 subunit of RT (pdb code: 3DLK, ( 38 )) (blue).
The RMSD for residues 427–550 between the isolated RH domain (pdb: 3K2P) and RT (pdb: 3DLK, p66 subunit), is 0.38Å.
Publication Year: 2014
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