Primary Citation PubMed: 18676450
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Crystal engineering of HIV-1 reverse transcriptase for structure-based drug design.
(2008) Nucleic Acids Res 36
PubMed: 18676450 | PubMedCentral: PMC2528191 | DOI: 10.1093/nar/gkn464
The atomic coordinates and structure factors are deposited in Protein Data Bank (PDB) with accession code 3DLK.
Diffraction data and refinement statistics Unliganded RT69A PDB ID 3DLK X-ray source CHESS F1 Wavelength (Å) 0.9176 Space group C2 Cell constants ( a, b, c in Å; β in degrees) 164.01, 72.04, 109.33; 104.38 Resolution range (Å) (last shell) 50–1.85 (1.88–1.85) Number of unique reflections (number of observations) 99 493 (257 025) Completeness (%) (in last shell) 94.5 (84.8) R -merge (in last shell) 0.074 (0.588) Average I /σ( I ) (in last shell) 14.4 (1.9) Sigma cut-off | I | < −0.5σ( I ) Refinement statistics Total number of atoms (solvent atoms) 8051 (188) Resolution (Å) 40.0–1.85 Number of reflections ( R free set) 99 441 (2991) Completeness (%) (minus R free set) 94.3 (91.4) Cutoff criteria | F | < 0 R work 0.238 R free 0.252 Root mean square deviations Bond lengths (Å) 0.006 Bond angles (degrees) 1.313 An 1.85 Å structure of apo-RT Crystal structure of apo-RT69A is refined at 1.85 Å resolution to an R work and R free of 0.238 and 0.252, respectively.
Publication Year: 2008
Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation.
(2014) Nucleic Acids Res 42
PubMed: 24574528 | PubMedCentral: PMC4005681 | DOI: 10.1093/nar/gku143
( C ) Ribbon diagram overlay corresponding to the p51ΔPL monomer crystal structure (orange) and the p51 subunit of RT (pdb code: 3DLK, ( 38 )) (blue).
The RMSD for residues 427–550 between the isolated RH domain (pdb: 3K2P) and RT (pdb: 3DLK, p66 subunit), is 0.38Å.
Publication Year: 2014
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.